miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28863 3' -51.7 NC_006146.1 + 37881 1.06 0.008626
Target:  5'- gAGCAGUAGAGACGGCGAGGUGCGa -3'
miRNA:   3'- -UCGUCAUCUCUGCCGCUCCACGC- -5'
28863 3' -51.7 NC_006146.1 + 167863 0.67 0.96773
Target:  5'- cGGC-GUAGGGGCacgGAGGUGCGg -3'
miRNA:   3'- -UCGuCAUCUCUGccgCUCCACGC- -5'
28863 3' -51.7 NC_006146.1 + 123088 0.66 0.97591
Target:  5'- uGGCAGcccgagcccauGAGACGGCGGuGG-GCGc -3'
miRNA:   3'- -UCGUCau---------CUCUGCCGCU-CCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 115163 0.66 0.983272
Target:  5'- gGGCGGUGGAGAUcuugGGCGuGuacGCGg -3'
miRNA:   3'- -UCGUCAUCUCUG----CCGCuCca-CGC- -5'
28863 3' -51.7 NC_006146.1 + 75479 0.73 0.730392
Target:  5'- uGUGGUcacGGGGACGGCGGGGgccgGCa -3'
miRNA:   3'- uCGUCA---UCUCUGCCGCUCCa---CGc -5'
28863 3' -51.7 NC_006146.1 + 115942 0.73 0.730392
Target:  5'- cAGCGGUAGcGGCGGCGGcGGUcGCc -3'
miRNA:   3'- -UCGUCAUCuCUGCCGCU-CCA-CGc -5'
28863 3' -51.7 NC_006146.1 + 6113 0.7 0.868748
Target:  5'- aGGCaacGGUGGAGGCGGUGGGGa--- -3'
miRNA:   3'- -UCG---UCAUCUCUGCCGCUCCacgc -5'
28863 3' -51.7 NC_006146.1 + 128654 0.69 0.911008
Target:  5'- cGCAuucGGGGACGGCGGGGacggGCa -3'
miRNA:   3'- uCGUca-UCUCUGCCGCUCCa---CGc -5'
28863 3' -51.7 NC_006146.1 + 12803 0.68 0.943984
Target:  5'- gGGCGgacGUAcGGACGGCGGcugccGGUGCGc -3'
miRNA:   3'- -UCGU---CAUcUCUGCCGCU-----CCACGC- -5'
28863 3' -51.7 NC_006146.1 + 26991 0.67 0.964381
Target:  5'- cGGCAGgggcaacgaAGGGaACGGCGAGaGUGuCGa -3'
miRNA:   3'- -UCGUCa--------UCUC-UGCCGCUC-CAC-GC- -5'
28863 3' -51.7 NC_006146.1 + 42373 0.68 0.952893
Target:  5'- cGCcGccAGGGugGGCGAGGgGCGc -3'
miRNA:   3'- uCGuCa-UCUCugCCGCUCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 40269 0.68 0.934041
Target:  5'- cGUAGUAGGGA-GGCGcGG-GCGg -3'
miRNA:   3'- uCGUCAUCUCUgCCGCuCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 100010 0.81 0.351088
Target:  5'- gAGCGGgcacgucgGGAGGCGGCGGGGUccGCGg -3'
miRNA:   3'- -UCGUCa-------UCUCUGCCGCUCCA--CGC- -5'
28863 3' -51.7 NC_006146.1 + 140082 0.68 0.952893
Target:  5'- gGGUGGUGGAGGgGGUggaaGAGGgggugGCGg -3'
miRNA:   3'- -UCGUCAUCUCUgCCG----CUCCa----CGC- -5'
28863 3' -51.7 NC_006146.1 + 77832 0.75 0.645793
Target:  5'- cGGCGGagggGGGGGCGGgGGGGUGgGa -3'
miRNA:   3'- -UCGUCa---UCUCUGCCgCUCCACgC- -5'
28863 3' -51.7 NC_006146.1 + 35882 0.68 0.934041
Target:  5'- uGgAGUGGGGGUGGUGGGGUGaCGc -3'
miRNA:   3'- uCgUCAUCUCUGCCGCUCCAC-GC- -5'
28863 3' -51.7 NC_006146.1 + 122604 0.68 0.952893
Target:  5'- cGaCGGUGGAG--GGCGAGGgGCGg -3'
miRNA:   3'- uC-GUCAUCUCugCCGCUCCaCGC- -5'
28863 3' -51.7 NC_006146.1 + 60477 0.66 0.975647
Target:  5'- gAGCGGUgagaggccGGGgggccagcucccccGACGGCGAgGGUGCu -3'
miRNA:   3'- -UCGUCA--------UCU--------------CUGCCGCU-CCACGc -5'
28863 3' -51.7 NC_006146.1 + 70962 0.73 0.720034
Target:  5'- uGCGGaGGAGGCGGgagcgGGGGUGCGa -3'
miRNA:   3'- uCGUCaUCUCUGCCg----CUCCACGC- -5'
28863 3' -51.7 NC_006146.1 + 127474 0.72 0.809918
Target:  5'- cGCAGgcuacugauggacgaGGAGACGGCGGGGgucGCa -3'
miRNA:   3'- uCGUCa--------------UCUCUGCCGCUCCa--CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.