Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28865 | 3' | -42.4 | NC_006146.1 | + | 37440 | 1.06 | 0.074698 |
Target: 5'- gACACCUAGUGAAAAGUGGUGCGc -3' miRNA: 3'- -UGUGGAUCACUUUUCACCACGC- -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 60142 | 0.81 | 0.908387 |
Target: 5'- -gACCUGGUGggGGGUGuGUGCc -3' miRNA: 3'- ugUGGAUCACuuUUCAC-CACGc -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 37713 | 0.75 | 0.992744 |
Target: 5'- -gACCUAGUGGAucguGUGGUGUu -3' miRNA: 3'- ugUGGAUCACUUuu--CACCACGc -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 131535 | 0.75 | 0.99473 |
Target: 5'- gGCGCCgAGUGGGAcguuuGGUGGUGgGa -3' miRNA: 3'- -UGUGGaUCACUUU-----UCACCACgC- -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 81063 | 0.72 | 0.999501 |
Target: 5'- cGCGCCacaaaguguuggGGUGccAAGUGGUGCGu -3' miRNA: 3'- -UGUGGa-----------UCACuuUUCACCACGC- -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 37297 | 0.72 | 0.999524 |
Target: 5'- aGC-CCUGGUGAGAcauAGUGGauaGCGg -3' miRNA: 3'- -UGuGGAUCACUUU---UCACCa--CGC- -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 105753 | 0.72 | 0.999627 |
Target: 5'- cACACCUGGUGA--GGUG-UGCc -3' miRNA: 3'- -UGUGGAUCACUuuUCACcACGc -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 26552 | 0.7 | 0.999928 |
Target: 5'- -aGCCUGGUGGGcguAGUGGgGCa -3' miRNA: 3'- ugUGGAUCACUUu--UCACCaCGc -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 103838 | 0.7 | 0.999928 |
Target: 5'- -aACCUGG-GAGAAGagGGUGCu -3' miRNA: 3'- ugUGGAUCaCUUUUCa-CCACGc -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 44829 | 0.7 | 0.999961 |
Target: 5'- uGCGgCUGGUGAcgGAGGUGgGUGUa -3' miRNA: 3'- -UGUgGAUCACU--UUUCAC-CACGc -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 121553 | 0.69 | 0.99999 |
Target: 5'- -aGCCUaucaucgaGGUGAAAAGUGG-GCc -3' miRNA: 3'- ugUGGA--------UCACUUUUCACCaCGc -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 122596 | 0.68 | 0.999995 |
Target: 5'- aGCACCUccgacGGUGGAGGGcgagGG-GCGg -3' miRNA: 3'- -UGUGGA-----UCACUUUUCa---CCaCGC- -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 43004 | 0.68 | 0.999998 |
Target: 5'- cCGCCgGGUGAGA---GGUGCGa -3' miRNA: 3'- uGUGGaUCACUUUucaCCACGC- -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 116289 | 0.68 | 0.999998 |
Target: 5'- cGCACCgcacgGGUGAAu-GUGGgGCa -3' miRNA: 3'- -UGUGGa----UCACUUuuCACCaCGc -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 149654 | 0.67 | 0.999999 |
Target: 5'- -uGCCUgGGUGugguGGAGUGGUGgGc -3' miRNA: 3'- ugUGGA-UCACu---UUUCACCACgC- -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 152731 | 0.67 | 0.999999 |
Target: 5'- -uGCCUgGGUGugguGGAGUGGUGgGc -3' miRNA: 3'- ugUGGA-UCACu---UUUCACCACgC- -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 114245 | 0.68 | 0.999999 |
Target: 5'- gGCACCUcAGgGAGGgccagcucguAGUGGUGCc -3' miRNA: 3'- -UGUGGA-UCaCUUU----------UCACCACGc -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 65841 | 0.67 | 0.999999 |
Target: 5'- -gGCCagUGGUGAu--GUGGUGCc -3' miRNA: 3'- ugUGG--AUCACUuuuCACCACGc -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 33815 | 0.68 | 0.999999 |
Target: 5'- uGCACCUGGaaggcaacgggggugGggGAGggaggGGUGUGg -3' miRNA: 3'- -UGUGGAUCa--------------CuuUUCa----CCACGC- -5' |
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28865 | 3' | -42.4 | NC_006146.1 | + | 33628 | 0.68 | 0.999999 |
Target: 5'- uGCACCUGGaaggcaacgggggugGggGAGggaggGGUGUGg -3' miRNA: 3'- -UGUGGAUCa--------------CuuUUCa----CCACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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