miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28865 3' -42.4 NC_006146.1 + 6973 0.66 1
Target:  5'- -aGCCUAGagguuacgacagaGggGGGUGGUGUGc -3'
miRNA:   3'- ugUGGAUCa------------CuuUUCACCACGC- -5'
28865 3' -42.4 NC_006146.1 + 18382 0.67 1
Target:  5'- uGguCCUGGUGGccGGGGUGGUGa- -3'
miRNA:   3'- -UguGGAUCACU--UUUCACCACgc -5'
28865 3' -42.4 NC_006146.1 + 26552 0.7 0.999928
Target:  5'- -aGCCUGGUGGGcguAGUGGgGCa -3'
miRNA:   3'- ugUGGAUCACUUu--UCACCaCGc -5'
28865 3' -42.4 NC_006146.1 + 33628 0.68 0.999999
Target:  5'- uGCACCUGGaaggcaacgggggugGggGAGggaggGGUGUGg -3'
miRNA:   3'- -UGUGGAUCa--------------CuuUUCa----CCACGC- -5'
28865 3' -42.4 NC_006146.1 + 33815 0.68 0.999999
Target:  5'- uGCACCUGGaaggcaacgggggugGggGAGggaggGGUGUGg -3'
miRNA:   3'- -UGUGGAUCa--------------CuuUUCa----CCACGC- -5'
28865 3' -42.4 NC_006146.1 + 34590 0.66 1
Target:  5'- uAUACCUAGUG---GGUGGaGCc -3'
miRNA:   3'- -UGUGGAUCACuuuUCACCaCGc -5'
28865 3' -42.4 NC_006146.1 + 35858 0.66 1
Target:  5'- uACAUCUcGUGucu-GUGGUGCu -3'
miRNA:   3'- -UGUGGAuCACuuuuCACCACGc -5'
28865 3' -42.4 NC_006146.1 + 37297 0.72 0.999524
Target:  5'- aGC-CCUGGUGAGAcauAGUGGauaGCGg -3'
miRNA:   3'- -UGuGGAUCACUUU---UCACCa--CGC- -5'
28865 3' -42.4 NC_006146.1 + 37440 1.06 0.074698
Target:  5'- gACACCUAGUGAAAAGUGGUGCGc -3'
miRNA:   3'- -UGUGGAUCACUUUUCACCACGC- -5'
28865 3' -42.4 NC_006146.1 + 37713 0.75 0.992744
Target:  5'- -gACCUAGUGGAucguGUGGUGUu -3'
miRNA:   3'- ugUGGAUCACUUuu--CACCACGc -5'
28865 3' -42.4 NC_006146.1 + 38382 0.66 1
Target:  5'- cCACgUAGUcucu-GUGGUGCGg -3'
miRNA:   3'- uGUGgAUCAcuuuuCACCACGC- -5'
28865 3' -42.4 NC_006146.1 + 39985 0.68 0.999999
Target:  5'- cACuCCUAGUGAGuGGGUGGcccgGCa -3'
miRNA:   3'- -UGuGGAUCACUU-UUCACCa---CGc -5'
28865 3' -42.4 NC_006146.1 + 40547 0.67 1
Target:  5'- uGCAgCagGGUcauGAAGGUGGUGCGg -3'
miRNA:   3'- -UGUgGa-UCAc--UUUUCACCACGC- -5'
28865 3' -42.4 NC_006146.1 + 42831 0.66 1
Target:  5'- cGCACCUGcaUGAGGccGGUGGUcuuGCGg -3'
miRNA:   3'- -UGUGGAUc-ACUUU--UCACCA---CGC- -5'
28865 3' -42.4 NC_006146.1 + 43004 0.68 0.999998
Target:  5'- cCGCCgGGUGAGA---GGUGCGa -3'
miRNA:   3'- uGUGGaUCACUUUucaCCACGC- -5'
28865 3' -42.4 NC_006146.1 + 43222 0.67 0.999999
Target:  5'- cGCugCUGGUGAGAGGagccccccUGGaGCa -3'
miRNA:   3'- -UGugGAUCACUUUUC--------ACCaCGc -5'
28865 3' -42.4 NC_006146.1 + 44829 0.7 0.999961
Target:  5'- uGCGgCUGGUGAcgGAGGUGgGUGUa -3'
miRNA:   3'- -UGUgGAUCACU--UUUCAC-CACGc -5'
28865 3' -42.4 NC_006146.1 + 45079 0.66 1
Target:  5'- -uGCCUcGUGggGAGagggagGGUGCc -3'
miRNA:   3'- ugUGGAuCACuuUUCa-----CCACGc -5'
28865 3' -42.4 NC_006146.1 + 54705 0.67 1
Target:  5'- gACuguCCUGGUGAAuGGGcUGGUGgGa -3'
miRNA:   3'- -UGu--GGAUCACUU-UUC-ACCACgC- -5'
28865 3' -42.4 NC_006146.1 + 60142 0.81 0.908387
Target:  5'- -gACCUGGUGggGGGUGuGUGCc -3'
miRNA:   3'- ugUGGAUCACuuUUCAC-CACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.