miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28867 5' -41 NC_006146.1 + 111975 0.67 1
Target:  5'- aCAGauuGGCCGA-GUUcaugGCCUCGc -3'
miRNA:   3'- -GUCau-UCGGCUaCAAa---UGGAGC- -5'
28867 5' -41 NC_006146.1 + 95739 0.68 1
Target:  5'- cCAGUGgggggGGCUGGUGUUgGCCcCGg -3'
miRNA:   3'- -GUCAU-----UCGGCUACAAaUGGaGC- -5'
28867 5' -41 NC_006146.1 + 112510 0.68 1
Target:  5'- gCGGUccagGGGCCGGUGgaggGCCUgGg -3'
miRNA:   3'- -GUCA----UUCGGCUACaaa-UGGAgC- -5'
28867 5' -41 NC_006146.1 + 106983 0.68 1
Target:  5'- cCAGUAGGCacaaGggUGCCUCGu -3'
miRNA:   3'- -GUCAUUCGgcuaCaaAUGGAGC- -5'
28867 5' -41 NC_006146.1 + 141562 0.68 1
Target:  5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3'
miRNA:   3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5'
28867 5' -41 NC_006146.1 + 144640 0.68 1
Target:  5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3'
miRNA:   3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5'
28867 5' -41 NC_006146.1 + 147717 0.68 1
Target:  5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3'
miRNA:   3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5'
28867 5' -41 NC_006146.1 + 150795 0.68 1
Target:  5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3'
miRNA:   3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5'
28867 5' -41 NC_006146.1 + 153873 0.68 1
Target:  5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3'
miRNA:   3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5'
28867 5' -41 NC_006146.1 + 39651 0.69 1
Target:  5'- aGGUGGGCUGAgac-UGCCUUGg -3'
miRNA:   3'- gUCAUUCGGCUacaaAUGGAGC- -5'
28867 5' -41 NC_006146.1 + 167925 0.66 1
Target:  5'- aGGUAcuGGCCGuacucgUACCUCGc -3'
miRNA:   3'- gUCAU--UCGGCuacaa-AUGGAGC- -5'
28867 5' -41 NC_006146.1 + 77961 0.68 1
Target:  5'- uGGgccgGAGCCGGUG---GCCUUGg -3'
miRNA:   3'- gUCa---UUCGGCUACaaaUGGAGC- -5'
28867 5' -41 NC_006146.1 + 112434 0.67 1
Target:  5'- uCAGgaGGCUGAUGUgcUUGCCg-- -3'
miRNA:   3'- -GUCauUCGGCUACA--AAUGGagc -5'
28867 5' -41 NC_006146.1 + 45066 0.68 1
Target:  5'- gGGgcGGCUGAgg--UGCCUCGu -3'
miRNA:   3'- gUCauUCGGCUacaaAUGGAGC- -5'
28867 5' -41 NC_006146.1 + 159783 0.67 1
Target:  5'- aGGUAGGCCGAgggGUcgaGCCcaUCGg -3'
miRNA:   3'- gUCAUUCGGCUa--CAaa-UGG--AGC- -5'
28867 5' -41 NC_006146.1 + 150866 0.67 1
Target:  5'- gGGgaugAGGCCGGUGaugcggACCUUGg -3'
miRNA:   3'- gUCa---UUCGGCUACaaa---UGGAGC- -5'
28867 5' -41 NC_006146.1 + 149283 0.66 1
Target:  5'- -cGUAGGCCGGgu----CCUCGg -3'
miRNA:   3'- guCAUUCGGCUacaaauGGAGC- -5'
28867 5' -41 NC_006146.1 + 4421 0.66 1
Target:  5'- aCGGUccagGGGCUGGUGaaaagcgGCCUCGu -3'
miRNA:   3'- -GUCA----UUCGGCUACaaa----UGGAGC- -5'
28867 5' -41 NC_006146.1 + 156951 0.68 1
Target:  5'- aCAGUGAGCUcagGAgccgGg--GCCUCGg -3'
miRNA:   3'- -GUCAUUCGG---CUa---CaaaUGGAGC- -5'
28867 5' -41 NC_006146.1 + 153889 0.69 0.999999
Target:  5'- gCAGUAGGCCGuucUGUUUucgaGCUUCc -3'
miRNA:   3'- -GUCAUUCGGCu--ACAAA----UGGAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.