miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2887 3' -60.5 NC_001493.1 + 5691 0.68 0.602186
Target:  5'- aUCGAGAGUGgCAgcuCCCCCGggaaaCGCC-CUc -3'
miRNA:   3'- -AGCUCUCGCgGU---GGGGGUa----GCGGuGG- -5'
2887 3' -60.5 NC_001493.1 + 24924 0.68 0.602186
Target:  5'- aUGAGAGCGCCGuuCCCuguuaCGggugaaaaauaCCACCa -3'
miRNA:   3'- aGCUCUCGCGGUggGGGua---GC-----------GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 126380 0.68 0.592275
Target:  5'- -aGAGAGCagacGCUaaauACCCgaaCCAUgGCCGCCg -3'
miRNA:   3'- agCUCUCG----CGG----UGGG---GGUAgCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 33055 0.68 0.592275
Target:  5'- gUGAGAuacuggGuCGUCACCCUCAggGCCACUa -3'
miRNA:   3'- aGCUCU------C-GCGGUGGGGGUagCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 69510 0.68 0.592275
Target:  5'- cCGAGGgguauggcgcGCGCCuuCCCCAUCGCguUACa -3'
miRNA:   3'- aGCUCU----------CGCGGugGGGGUAGCG--GUGg -5'
2887 3' -60.5 NC_001493.1 + 10826 0.68 0.592275
Target:  5'- -aGAGAGCagacGCUaaauACCCgaaCCAUgGCCGCCg -3'
miRNA:   3'- agCUCUCG----CGG----UGGG---GGUAgCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 5862 0.68 0.582391
Target:  5'- aUCGAGAGgGCguUUCCCGggggaGCUGCCa -3'
miRNA:   3'- -AGCUCUCgCGguGGGGGUag---CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 121416 0.68 0.582391
Target:  5'- aUCGAGAGgGCguUUCCCGggggaGCUGCCa -3'
miRNA:   3'- -AGCUCUCgCGguGGGGGUag---CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 107051 0.68 0.572542
Target:  5'- -aGAaccGGgGCCGCCCUCAggUCGaCCGCCg -3'
miRNA:   3'- agCUc--UCgCGGUGGGGGU--AGC-GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 28270 0.68 0.572542
Target:  5'- cUCGcGGAGCGCCGCCUCgcUCGCaACg -3'
miRNA:   3'- -AGC-UCUCGCGGUGGGGguAGCGgUGg -5'
2887 3' -60.5 NC_001493.1 + 63381 0.68 0.572542
Target:  5'- aCGGGAGCGaCCGCa-CCGUgGUgACCa -3'
miRNA:   3'- aGCUCUCGC-GGUGggGGUAgCGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 30881 0.68 0.571559
Target:  5'- aUCcAGAGUcCCccacaucGCCCCCAU-GCCACCg -3'
miRNA:   3'- -AGcUCUCGcGG-------UGGGGGUAgCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 66581 0.68 0.562732
Target:  5'- cUCGGGAuaGUGCCGCCCCCcuacuAUUaCgGCCg -3'
miRNA:   3'- -AGCUCU--CGCGGUGGGGG-----UAGcGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 21237 0.68 0.562732
Target:  5'- uUC-AGGcCGCCGCCCCuggugaagccgCAUCGCCGCa -3'
miRNA:   3'- -AGcUCUcGCGGUGGGG-----------GUAGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 82228 0.68 0.561753
Target:  5'- cUCGAccuccucGGGCugGCCACCCCCGauaUUGUCGCg -3'
miRNA:   3'- -AGCU-------CUCG--CGGUGGGGGU---AGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 59882 0.69 0.543255
Target:  5'- gUCG-GAGCGaugCGCCgCCGugcUCGUCACCg -3'
miRNA:   3'- -AGCuCUCGCg--GUGGgGGU---AGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 46678 0.69 0.543255
Target:  5'- -gGAGAGCGCaugGCCaCCAUCGCgGgCg -3'
miRNA:   3'- agCUCUCGCGg--UGGgGGUAGCGgUgG- -5'
2887 3' -60.5 NC_001493.1 + 94885 0.69 0.542287
Target:  5'- aUCG-GGGCGUCggacacggccaucGCCCCCGUgGCaccCACCg -3'
miRNA:   3'- -AGCuCUCGCGG-------------UGGGGGUAgCG---GUGG- -5'
2887 3' -60.5 NC_001493.1 + 131257 0.69 0.524004
Target:  5'- cUCGGuGAGCGCaucgagACCCuCCGg-GCCACCu -3'
miRNA:   3'- -AGCU-CUCGCGg-----UGGG-GGUagCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 45089 0.69 0.524004
Target:  5'- ---cGGGCaGCCACCaaCAUCGCgGCCg -3'
miRNA:   3'- agcuCUCG-CGGUGGggGUAGCGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.