miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2887 3' -60.5 NC_001493.1 + 87192 0.67 0.66185
Target:  5'- cCGAGuaUGUCACCacaCCCGcagCGCCACCg -3'
miRNA:   3'- aGCUCucGCGGUGG---GGGUa--GCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 130523 0.67 0.66185
Target:  5'- gCGGGGcuccacGUGCCAgCCCCCGUUGggacCCAUCa -3'
miRNA:   3'- aGCUCU------CGCGGU-GGGGGUAGC----GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 14969 0.67 0.66185
Target:  5'- gCGGGGcuccacGUGCCAgCCCCCGUUGggacCCAUCa -3'
miRNA:   3'- aGCUCU------CGCGGU-GGGGGUAGC----GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 32760 0.67 0.66185
Target:  5'- gCGGGGGgGUCgugACCCCCGaguUCuaCACCg -3'
miRNA:   3'- aGCUCUCgCGG---UGGGGGU---AGcgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 39916 0.67 0.651918
Target:  5'- aUCGAGAugauCGCUuCCCUCGUCGCgCuCCg -3'
miRNA:   3'- -AGCUCUc---GCGGuGGGGGUAGCG-GuGG- -5'
2887 3' -60.5 NC_001493.1 + 71414 0.67 0.650924
Target:  5'- aCGAGAGUuCCAuuuCCCCCAgugccucgagucUCGCCcuguugaGCCu -3'
miRNA:   3'- aGCUCUCGcGGU---GGGGGU------------AGCGG-------UGG- -5'
2887 3' -60.5 NC_001493.1 + 79965 0.67 0.641972
Target:  5'- -gGAGcAGCGCaACCCCCucCGUCACa -3'
miRNA:   3'- agCUC-UCGCGgUGGGGGuaGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 66060 0.67 0.641972
Target:  5'- gUCGuAGAGCuuCCACCCgCCAaagcUCGCgugCGCCa -3'
miRNA:   3'- -AGC-UCUCGc-GGUGGG-GGU----AGCG---GUGG- -5'
2887 3' -60.5 NC_001493.1 + 124721 0.67 0.641972
Target:  5'- -gGGGAG-GCCgugauGCgaaCCAUCGCCACCg -3'
miRNA:   3'- agCUCUCgCGG-----UGgg-GGUAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 56566 0.67 0.632018
Target:  5'- gCGAcGAGUGCCGCgCUggacaugguUAUCGCgGCCa -3'
miRNA:   3'- aGCU-CUCGCGGUGgGG---------GUAGCGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 39482 0.67 0.632018
Target:  5'- aUCGGGAucggcgucaGCGUCACCCgCGUCacgccggaucCCACCa -3'
miRNA:   3'- -AGCUCU---------CGCGGUGGGgGUAGc---------GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 19601 0.67 0.622065
Target:  5'- gCGGGAGCG-UACCCUCcgCGaaaUACCg -3'
miRNA:   3'- aGCUCUCGCgGUGGGGGuaGCg--GUGG- -5'
2887 3' -60.5 NC_001493.1 + 124668 0.67 0.622065
Target:  5'- aCGGGAGCcgcgggGUCAUCCCCG-CGaCCGCg -3'
miRNA:   3'- aGCUCUCG------CGGUGGGGGUaGC-GGUGg -5'
2887 3' -60.5 NC_001493.1 + 9113 0.67 0.622065
Target:  5'- aCGGGAGCcgcgggGUCAUCCCCG-CGaCCGCg -3'
miRNA:   3'- aGCUCUCG------CGGUGGGGGUaGC-GGUGg -5'
2887 3' -60.5 NC_001493.1 + 63001 0.67 0.622065
Target:  5'- aCGGGAGCGaccggCACCgugaCCGUCGCgACg -3'
miRNA:   3'- aGCUCUCGCg----GUGGg---GGUAGCGgUGg -5'
2887 3' -60.5 NC_001493.1 + 42750 0.67 0.622065
Target:  5'- cCGAGccCGCCgugaaGCCacaaCCgAUCGCCACCa -3'
miRNA:   3'- aGCUCucGCGG-----UGGg---GG-UAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 30947 0.67 0.612118
Target:  5'- gUCGGGguGGCGCUcccggcaacGCCCCUcgUGCCguacACCg -3'
miRNA:   3'- -AGCUC--UCGCGG---------UGGGGGuaGCGG----UGG- -5'
2887 3' -60.5 NC_001493.1 + 115535 0.68 0.602186
Target:  5'- aUCcAGAcccacccuCGCCACCCCCA-CGCCcCCu -3'
miRNA:   3'- -AGcUCUc-------GCGGUGGGGGUaGCGGuGG- -5'
2887 3' -60.5 NC_001493.1 + 5691 0.68 0.602186
Target:  5'- aUCGAGAGUGgCAgcuCCCCCGggaaaCGCC-CUc -3'
miRNA:   3'- -AGCUCUCGCgGU---GGGGGUa----GCGGuGG- -5'
2887 3' -60.5 NC_001493.1 + 62040 0.68 0.602186
Target:  5'- cCGAuGA-CGCCgcauugauaGCCCCgGUCGUCGCCc -3'
miRNA:   3'- aGCU-CUcGCGG---------UGGGGgUAGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.