miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2887 3' -60.5 NC_001493.1 + 124879 0.7 0.441157
Target:  5'- gCGAuGGUucgcaucacgGCCuCCCCCcUCGCCGCCa -3'
miRNA:   3'- aGCUcUCG----------CGGuGGGGGuAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 9325 0.7 0.441157
Target:  5'- gCGAuGGUucgcaucacgGCCuCCCCCcUCGCCGCCa -3'
miRNA:   3'- aGCUcUCG----------CGGuGGGGGuAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 112517 0.7 0.441157
Target:  5'- aCGGGGGCGCCGaaucaguaCCguUCGCaCGCCg -3'
miRNA:   3'- aGCUCUCGCGGUgg------GGguAGCG-GUGG- -5'
2887 3' -60.5 NC_001493.1 + 110399 0.7 0.449117
Target:  5'- cCGGGcaucgugugucccAGuCGCCACCCCC--CGCCACa -3'
miRNA:   3'- aGCUC-------------UC-GCGGUGGGGGuaGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 48271 0.7 0.450006
Target:  5'- gUCGGGuGCGCCgagGCCCuCCAcgCGgUACCg -3'
miRNA:   3'- -AGCUCuCGCGG---UGGG-GGUa-GCgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 84043 0.7 0.467991
Target:  5'- -gGGGAGCGCCGCgCgCCGgacgaacacgGCCACCu -3'
miRNA:   3'- agCUCUCGCGGUGgG-GGUag--------CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 129183 0.7 0.467991
Target:  5'- aUCGAcGGCGCaCGCCUCCGucUCGCaCGCg -3'
miRNA:   3'- -AGCUcUCGCG-GUGGGGGU--AGCG-GUGg -5'
2887 3' -60.5 NC_001493.1 + 28128 0.7 0.467991
Target:  5'- uUCGGGugccGCGCgUGCCCCgAUCGaUCACCa -3'
miRNA:   3'- -AGCUCu---CGCG-GUGGGGgUAGC-GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 67667 0.7 0.467991
Target:  5'- gCGAGuAGCGCCAaCCCCGaUGgUACCa -3'
miRNA:   3'- aGCUC-UCGCGGUgGGGGUaGCgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 3191 0.7 0.467991
Target:  5'- gUCGAGGaUGCCAUCCCCGcgGCCGuCCc -3'
miRNA:   3'- -AGCUCUcGCGGUGGGGGUagCGGU-GG- -5'
2887 3' -60.5 NC_001493.1 + 118745 0.7 0.467991
Target:  5'- gUCGAGGaUGCCAUCCCCGcgGCCGuCCc -3'
miRNA:   3'- -AGCUCUcGCGGUGGGGGUagCGGU-GG- -5'
2887 3' -60.5 NC_001493.1 + 73809 0.7 0.467991
Target:  5'- uUCGAG-GCGCCACUaaaCUAuaaaaaggucauUCGCCACa -3'
miRNA:   3'- -AGCUCuCGCGGUGGg--GGU------------AGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 13628 0.7 0.467991
Target:  5'- aUCGAcGGCGCaCGCCUCCGucUCGCaCGCg -3'
miRNA:   3'- -AGCUcUCGCG-GUGGGGGU--AGCG-GUGg -5'
2887 3' -60.5 NC_001493.1 + 128507 0.7 0.477121
Target:  5'- gCGGGcGCugGCCGCCgCCGagaUCGCCAUCg -3'
miRNA:   3'- aGCUCuCG--CGGUGGgGGU---AGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 65811 0.69 0.49564
Target:  5'- uUCGAGAGCGUauCGCUagaaCCCGaUGCUGCCg -3'
miRNA:   3'- -AGCUCUCGCG--GUGG----GGGUaGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 93816 0.69 0.50502
Target:  5'- aUCGGcGGGCGCgACCUgCAggGCCGCUc -3'
miRNA:   3'- -AGCU-CUCGCGgUGGGgGUagCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 69304 0.69 0.514477
Target:  5'- cCGAGuAGUcCCgACCCCCAacccagUCGCaCACCg -3'
miRNA:   3'- aGCUC-UCGcGG-UGGGGGU------AGCG-GUGG- -5'
2887 3' -60.5 NC_001493.1 + 45089 0.69 0.524004
Target:  5'- ---cGGGCaGCCACCaaCAUCGCgGCCg -3'
miRNA:   3'- agcuCUCG-CGGUGGggGUAGCGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 131257 0.69 0.524004
Target:  5'- cUCGGuGAGCGCaucgagACCCuCCGg-GCCACCu -3'
miRNA:   3'- -AGCU-CUCGCGg-----UGGG-GGUagCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 94885 0.69 0.542287
Target:  5'- aUCG-GGGCGUCggacacggccaucGCCCCCGUgGCaccCACCg -3'
miRNA:   3'- -AGCuCUCGCGG-------------UGGGGGUAgCG---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.