miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2887 3' -60.5 NC_001493.1 + 19263 0.66 0.720682
Target:  5'- gCGGGuGCGCCAUCUCaaaGUCGaugaGCCc -3'
miRNA:   3'- aGCUCuCGCGGUGGGGg--UAGCgg--UGG- -5'
2887 3' -60.5 NC_001493.1 + 19601 0.67 0.622065
Target:  5'- gCGGGAGCG-UACCCUCcgCGaaaUACCg -3'
miRNA:   3'- aGCUCUCGCgGUGGGGGuaGCg--GUGG- -5'
2887 3' -60.5 NC_001493.1 + 20272 0.71 0.406781
Target:  5'- cUCGGGucgugcGGCGCCAgugacccguucuCCUCCAUCaCCGCCg -3'
miRNA:   3'- -AGCUC------UCGCGGU------------GGGGGUAGcGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 21237 0.68 0.562732
Target:  5'- uUC-AGGcCGCCGCCCCuggugaagccgCAUCGCCGCa -3'
miRNA:   3'- -AGcUCUcGCGGUGGGG-----------GUAGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 24924 0.68 0.602186
Target:  5'- aUGAGAGCGCCGuuCCCuguuaCGggugaaaaauaCCACCa -3'
miRNA:   3'- aGCUCUCGCGGUggGGGua---GC-----------GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 27822 0.66 0.720682
Target:  5'- uUCGAGucCGgCACCggaucgacacuCUCAUCGUCACCc -3'
miRNA:   3'- -AGCUCucGCgGUGG-----------GGGUAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 27971 0.66 0.70127
Target:  5'- aUCGGGGcacGCGCgGCacccgaaCCCGUaucccaguuacCGCCGCCa -3'
miRNA:   3'- -AGCUCU---CGCGgUGg------GGGUA-----------GCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 28128 0.7 0.467991
Target:  5'- uUCGGGugccGCGCgUGCCCCgAUCGaUCACCa -3'
miRNA:   3'- -AGCUCu---CGCG-GUGGGGgUAGC-GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 28270 0.68 0.572542
Target:  5'- cUCGcGGAGCGCCGCCUCgcUCGCaACg -3'
miRNA:   3'- -AGC-UCUCGCGGUGGGGguAGCGgUGg -5'
2887 3' -60.5 NC_001493.1 + 28810 0.73 0.328601
Target:  5'- cUCGucGAGCGUC-CCCCCGUUacCCACCa -3'
miRNA:   3'- -AGCu-CUCGCGGuGGGGGUAGc-GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 30796 0.75 0.256083
Target:  5'- cCGGGAGCGCCACCCCgAcgaaguUUGUCgacggGCCg -3'
miRNA:   3'- aGCUCUCGCGGUGGGGgU------AGCGG-----UGG- -5'
2887 3' -60.5 NC_001493.1 + 30881 0.68 0.571559
Target:  5'- aUCcAGAGUcCCccacaucGCCCCCAU-GCCACCg -3'
miRNA:   3'- -AGcUCUCGcGG-------UGGGGGUAgCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 30947 0.67 0.612118
Target:  5'- gUCGGGguGGCGCUcccggcaacGCCCCUcgUGCCguacACCg -3'
miRNA:   3'- -AGCUC--UCGCGG---------UGGGGGuaGCGG----UGG- -5'
2887 3' -60.5 NC_001493.1 + 32760 0.67 0.66185
Target:  5'- gCGGGGGgGUCgugACCCCCGaguUCuaCACCg -3'
miRNA:   3'- aGCUCUCgCGG---UGGGGGU---AGcgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 33055 0.68 0.592275
Target:  5'- gUGAGAuacuggGuCGUCACCCUCAggGCCACUa -3'
miRNA:   3'- aGCUCU------C-GCGGUGGGGGUagCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 34871 0.72 0.366256
Target:  5'- aCGAGGGCGuacaaCCACCCCCGUU-CgACCc -3'
miRNA:   3'- aGCUCUCGC-----GGUGGGGGUAGcGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 38380 0.66 0.691476
Target:  5'- ----cAGCGUgGCUCCCAUgGaCCACCg -3'
miRNA:   3'- agcucUCGCGgUGGGGGUAgC-GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 39482 0.67 0.632018
Target:  5'- aUCGGGAucggcgucaGCGUCACCCgCGUCacgccggaucCCACCa -3'
miRNA:   3'- -AGCUCU---------CGCGGUGGGgGUAGc---------GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 39916 0.67 0.651918
Target:  5'- aUCGAGAugauCGCUuCCCUCGUCGCgCuCCg -3'
miRNA:   3'- -AGCUCUc---GCGGuGGGGGUAGCG-GuGG- -5'
2887 3' -60.5 NC_001493.1 + 42750 0.67 0.622065
Target:  5'- cCGAGccCGCCgugaaGCCacaaCCgAUCGCCACCa -3'
miRNA:   3'- aGCUCucGCGG-----UGGg---GG-UAGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.