miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2887 3' -60.5 NC_001493.1 + 3191 0.7 0.467991
Target:  5'- gUCGAGGaUGCCAUCCCCGcgGCCGuCCc -3'
miRNA:   3'- -AGCUCUcGCGGUGGGGGUagCGGU-GG- -5'
2887 3' -60.5 NC_001493.1 + 5165 0.72 0.382129
Target:  5'- cCGuGGGCauagugucGUCGCCCUCAUCGUCGCUa -3'
miRNA:   3'- aGCuCUCG--------CGGUGGGGGUAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 5691 0.68 0.602186
Target:  5'- aUCGAGAGUGgCAgcuCCCCCGggaaaCGCC-CUc -3'
miRNA:   3'- -AGCUCUCGCgGU---GGGGGUa----GCGGuGG- -5'
2887 3' -60.5 NC_001493.1 + 5862 0.68 0.582391
Target:  5'- aUCGAGAGgGCguUUCCCGggggaGCUGCCa -3'
miRNA:   3'- -AGCUCUCgCGguGGGGGUag---CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 8051 0.66 0.70127
Target:  5'- cCG-GGGCGUCcguugaaaucgACCCUCGUUucgggGCCACCg -3'
miRNA:   3'- aGCuCUCGCGG-----------UGGGGGUAG-----CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 8501 0.66 0.678677
Target:  5'- gCGAGAcGCGCgGCCCCUccacguucgaagcgGgcacggcgCGCCACg -3'
miRNA:   3'- aGCUCU-CGCGgUGGGGG--------------Ua-------GCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 9113 0.67 0.622065
Target:  5'- aCGGGAGCcgcgggGUCAUCCCCG-CGaCCGCg -3'
miRNA:   3'- aGCUCUCG------CGGUGGGGGUaGC-GGUGg -5'
2887 3' -60.5 NC_001493.1 + 9325 0.7 0.441157
Target:  5'- gCGAuGGUucgcaucacgGCCuCCCCCcUCGCCGCCa -3'
miRNA:   3'- aGCUcUCG----------CGGuGGGGGuAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 9943 0.73 0.300592
Target:  5'- -aGGGAGCGCCGCgaCCAUCacaaaCCACCg -3'
miRNA:   3'- agCUCUCGCGGUGggGGUAGc----GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 10647 0.66 0.711007
Target:  5'- cUCGGGAcGCGCCcgaucgcgcgaGCuCCCCGgguUCGaCACCc -3'
miRNA:   3'- -AGCUCU-CGCGG-----------UG-GGGGU---AGCgGUGG- -5'
2887 3' -60.5 NC_001493.1 + 10826 0.68 0.592275
Target:  5'- -aGAGAGCagacGCUaaauACCCgaaCCAUgGCCGCCg -3'
miRNA:   3'- agCUCUCG----CGG----UGGG---GGUAgCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 12672 0.66 0.68065
Target:  5'- gCGAguaucccGAGCGCCccgACCCCgGaCGCgACCc -3'
miRNA:   3'- aGCU-------CUCGCGG---UGGGGgUaGCGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 12953 0.7 0.441157
Target:  5'- gCGGGcGCugGCCGCCgCCgaGUCGCCAUCg -3'
miRNA:   3'- aGCUCuCG--CGGUGGgGG--UAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 13628 0.7 0.467991
Target:  5'- aUCGAcGGCGCaCGCCUCCGucUCGCaCGCg -3'
miRNA:   3'- -AGCUcUCGCG-GUGGGGGU--AGCG-GUGg -5'
2887 3' -60.5 NC_001493.1 + 14287 1.12 0.000653
Target:  5'- uUCGAGAGCGCCACCCCCAUCGCCACCa -3'
miRNA:   3'- -AGCUCUCGCGGUGGGGGUAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 14394 0.66 0.711007
Target:  5'- cCGuGAGguuaGCgGCCCCCG-CGUCGCUc -3'
miRNA:   3'- aGCuCUCg---CGgUGGGGGUaGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 14470 0.71 0.398453
Target:  5'- cUCGAGAGCGCguCUgCC---GCCACCa -3'
miRNA:   3'- -AGCUCUCGCGguGGgGGuagCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 14969 0.67 0.66185
Target:  5'- gCGGGGcuccacGUGCCAgCCCCCGUUGggacCCAUCa -3'
miRNA:   3'- aGCUCU------CGCGGU-GGGGGUAGC----GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 15703 0.72 0.382129
Target:  5'- cUCGGuGAGCGCaucgagACCCuCCGggGCCACCu -3'
miRNA:   3'- -AGCU-CUCGCGg-----UGGG-GGUagCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 18998 0.74 0.274463
Target:  5'- -aGGGAGCGaccgauccCCACCUCCcgCGCCGCg -3'
miRNA:   3'- agCUCUCGC--------GGUGGGGGuaGCGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.