miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2887 3' -60.5 NC_001493.1 + 82228 0.68 0.561753
Target:  5'- cUCGAccuccucGGGCugGCCACCCCCGauaUUGUCGCg -3'
miRNA:   3'- -AGCU-------CUCG--CGGUGGGGGU---AGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 48469 0.7 0.441157
Target:  5'- -aGAccGUGCCACCCaCgAUCGCCGCg -3'
miRNA:   3'- agCUcuCGCGGUGGG-GgUAGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 112517 0.7 0.441157
Target:  5'- aCGGGGGCGCCGaaucaguaCCguUCGCaCGCCg -3'
miRNA:   3'- aGCUCUCGCGGUgg------GGguAGCG-GUGG- -5'
2887 3' -60.5 NC_001493.1 + 110399 0.7 0.449117
Target:  5'- cCGGGcaucgugugucccAGuCGCCACCCCC--CGCCACa -3'
miRNA:   3'- aGCUC-------------UC-GCGGUGGGGGuaGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 73809 0.7 0.467991
Target:  5'- uUCGAG-GCGCCACUaaaCUAuaaaaaggucauUCGCCACa -3'
miRNA:   3'- -AGCUCuCGCGGUGGg--GGU------------AGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 128507 0.7 0.477121
Target:  5'- gCGGGcGCugGCCGCCgCCGagaUCGCCAUCg -3'
miRNA:   3'- aGCUCuCG--CGGUGGgGGU---AGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 65811 0.69 0.49564
Target:  5'- uUCGAGAGCGUauCGCUagaaCCCGaUGCUGCCg -3'
miRNA:   3'- -AGCUCUCGCG--GUGG----GGGUaGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 45089 0.69 0.524004
Target:  5'- ---cGGGCaGCCACCaaCAUCGCgGCCg -3'
miRNA:   3'- agcuCUCG-CGGUGGggGUAGCGgUGG- -5'
2887 3' -60.5 NC_001493.1 + 59882 0.69 0.543255
Target:  5'- gUCG-GAGCGaugCGCCgCCGugcUCGUCACCg -3'
miRNA:   3'- -AGCuCUCGCg--GUGGgGGU---AGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 12953 0.7 0.441157
Target:  5'- gCGGGcGCugGCCGCCgCCgaGUCGCCAUCg -3'
miRNA:   3'- aGCUCuCG--CGGUGGgGG--UAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 57414 0.71 0.42376
Target:  5'- gUCGucAGCGCCcuucguuuccggGCaCCCGUCGUCGCCg -3'
miRNA:   3'- -AGCucUCGCGG------------UGgGGGUAGCGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 20272 0.71 0.406781
Target:  5'- cUCGGGucgugcGGCGCCAgugacccguucuCCUCCAUCaCCGCCg -3'
miRNA:   3'- -AGCUC------UCGCGGU------------GGGGGUAGcGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 30796 0.75 0.256083
Target:  5'- cCGGGAGCGCCACCCCgAcgaaguUUGUCgacggGCCg -3'
miRNA:   3'- aGCUCUCGCGGUGGGGgU------AGCGG-----UGG- -5'
2887 3' -60.5 NC_001493.1 + 110266 0.74 0.26028
Target:  5'- uUCGAuGGGUGCCACCaggggcucaaucuuCgCCAUCGCCGCg -3'
miRNA:   3'- -AGCU-CUCGCGGUGG--------------G-GGUAGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 18998 0.74 0.274463
Target:  5'- -aGGGAGCGaccgauccCCACCUCCcgCGCCGCg -3'
miRNA:   3'- agCUCUCGC--------GGUGGGGGuaGCGGUGg -5'
2887 3' -60.5 NC_001493.1 + 9943 0.73 0.300592
Target:  5'- -aGGGAGCGCCGCgaCCAUCacaaaCCACCg -3'
miRNA:   3'- agCUCUCGCGGUGggGGUAGc----GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 125497 0.73 0.300592
Target:  5'- -aGGGAGCGCCGCgaCCAUCacaaaCCACCg -3'
miRNA:   3'- agCUCUCGCGGUGggGGUAGc----GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 54866 0.73 0.31436
Target:  5'- -gGGGAGCgaguggugcgaGCCGCCCCgGUCagcgccccgccGCCACCa -3'
miRNA:   3'- agCUCUCG-----------CGGUGGGGgUAG-----------CGGUGG- -5'
2887 3' -60.5 NC_001493.1 + 28810 0.73 0.328601
Target:  5'- cUCGucGAGCGUC-CCCCCGUUacCCACCa -3'
miRNA:   3'- -AGCu-CUCGCGGuGGGGGUAGc-GGUGG- -5'
2887 3' -60.5 NC_001493.1 + 34871 0.72 0.366256
Target:  5'- aCGAGGGCGuacaaCCACCCCCGUU-CgACCc -3'
miRNA:   3'- aGCUCUCGC-----GGUGGGGGUAGcGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.