Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2887 | 3' | -60.5 | NC_001493.1 | + | 129841 | 1.12 | 0.000653 |
Target: 5'- uUCGAGAGCGCCACCCCCAUCGCCACCa -3' miRNA: 3'- -AGCUCUCGCGGUGGGGGUAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 93816 | 0.69 | 0.50502 |
Target: 5'- aUCGGcGGGCGCgACCUgCAggGCCGCUc -3' miRNA: 3'- -AGCU-CUCGCGgUGGGgGUagCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 131257 | 0.69 | 0.524004 |
Target: 5'- cUCGGuGAGCGCaucgagACCCuCCGg-GCCACCu -3' miRNA: 3'- -AGCU-CUCGCGg-----UGGG-GGUagCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 90209 | 0.66 | 0.711007 |
Target: 5'- cCGGaauGCGCUAUaCCCCAaaugCGCCAUCg -3' miRNA: 3'- aGCUcu-CGCGGUG-GGGGUa---GCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 120719 | 0.72 | 0.382129 |
Target: 5'- cCGuGGGCauagugucGUCGCCCUCAUCGUCGCUa -3' miRNA: 3'- aGCuCUCG--------CGGUGGGGGUAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 5165 | 0.72 | 0.382129 |
Target: 5'- cCGuGGGCauagugucGUCGCCCUCAUCGUCGCUa -3' miRNA: 3'- aGCuCUCG--------CGGUGGGGGUAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 124879 | 0.7 | 0.441157 |
Target: 5'- gCGAuGGUucgcaucacgGCCuCCCCCcUCGCCGCCa -3' miRNA: 3'- aGCUcUCG----------CGGuGGGGGuAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 9325 | 0.7 | 0.441157 |
Target: 5'- gCGAuGGUucgcaucacgGCCuCCCCCcUCGCCGCCa -3' miRNA: 3'- aGCUcUCG----------CGGuGGGGGuAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 28128 | 0.7 | 0.467991 |
Target: 5'- uUCGGGugccGCGCgUGCCCCgAUCGaUCACCa -3' miRNA: 3'- -AGCUCu---CGCG-GUGGGGgUAGC-GGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 13628 | 0.7 | 0.467991 |
Target: 5'- aUCGAcGGCGCaCGCCUCCGucUCGCaCGCg -3' miRNA: 3'- -AGCUcUCGCG-GUGGGGGU--AGCG-GUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 118745 | 0.7 | 0.467991 |
Target: 5'- gUCGAGGaUGCCAUCCCCGcgGCCGuCCc -3' miRNA: 3'- -AGCUCUcGCGGUGGGGGUagCGGU-GG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 67667 | 0.7 | 0.467991 |
Target: 5'- gCGAGuAGCGCCAaCCCCGaUGgUACCa -3' miRNA: 3'- aGCUC-UCGCGGUgGGGGUaGCgGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 14287 | 1.12 | 0.000653 |
Target: 5'- uUCGAGAGCGCCACCCCCAUCGCCACCa -3' miRNA: 3'- -AGCUCUCGCGGUGGGGGUAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 3191 | 0.7 | 0.467991 |
Target: 5'- gUCGAGGaUGCCAUCCCCGcgGCCGuCCc -3' miRNA: 3'- -AGCUCUcGCGGUGGGGGUagCGGU-GG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 42946 | 0.72 | 0.366256 |
Target: 5'- --aGGAGCGCCgauaACCCCgAUCGCUuCCu -3' miRNA: 3'- agcUCUCGCGG----UGGGGgUAGCGGuGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 48271 | 0.7 | 0.450006 |
Target: 5'- gUCGGGuGCGCCgagGCCCuCCAcgCGgUACCg -3' miRNA: 3'- -AGCUCuCGCGG---UGGG-GGUa-GCgGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 129183 | 0.7 | 0.467991 |
Target: 5'- aUCGAcGGCGCaCGCCUCCGucUCGCaCGCg -3' miRNA: 3'- -AGCUcUCGCG-GUGGGGGU--AGCG-GUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 69304 | 0.69 | 0.514477 |
Target: 5'- cCGAGuAGUcCCgACCCCCAacccagUCGCaCACCg -3' miRNA: 3'- aGCUC-UCGcGG-UGGGGGU------AGCG-GUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 15703 | 0.72 | 0.382129 |
Target: 5'- cUCGGuGAGCGCaucgagACCCuCCGggGCCACCu -3' miRNA: 3'- -AGCU-CUCGCGg-----UGGG-GGUagCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 14470 | 0.71 | 0.398453 |
Target: 5'- cUCGAGAGCGCguCUgCC---GCCACCa -3' miRNA: 3'- -AGCUCUCGCGguGGgGGuagCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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