Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2887 | 3' | -60.5 | NC_001493.1 | + | 131257 | 0.69 | 0.524004 |
Target: 5'- cUCGGuGAGCGCaucgagACCCuCCGg-GCCACCu -3' miRNA: 3'- -AGCU-CUCGCGg-----UGGG-GGUagCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 130523 | 0.67 | 0.66185 |
Target: 5'- gCGGGGcuccacGUGCCAgCCCCCGUUGggacCCAUCa -3' miRNA: 3'- aGCUCU------CGCGGU-GGGGGUAGC----GGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 130501 | 0.66 | 0.671759 |
Target: 5'- -gGAGGGUGCCAUagcgCUCC--CGCUACCg -3' miRNA: 3'- agCUCUCGCGGUG----GGGGuaGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 129948 | 0.66 | 0.711007 |
Target: 5'- cCGuGAGguuaGCgGCCCCCG-CGUCGCUc -3' miRNA: 3'- aGCuCUCg---CGgUGGGGGUaGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 129841 | 1.12 | 0.000653 |
Target: 5'- uUCGAGAGCGCCACCCCCAUCGCCACCa -3' miRNA: 3'- -AGCUCUCGCGGUGGGGGUAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 129183 | 0.7 | 0.467991 |
Target: 5'- aUCGAcGGCGCaCGCCUCCGucUCGCaCGCg -3' miRNA: 3'- -AGCUcUCGCG-GUGGGGGU--AGCG-GUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 128507 | 0.7 | 0.477121 |
Target: 5'- gCGGGcGCugGCCGCCgCCGagaUCGCCAUCg -3' miRNA: 3'- aGCUCuCG--CGGUGGgGGU---AGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 128226 | 0.66 | 0.68065 |
Target: 5'- gCGAguaucccGAGCGCCccgACCCCgGaCGCgACCc -3' miRNA: 3'- aGCU-------CUCGCGG---UGGGGgUaGCGgUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 126380 | 0.68 | 0.592275 |
Target: 5'- -aGAGAGCagacGCUaaauACCCgaaCCAUgGCCGCCg -3' miRNA: 3'- agCUCUCG----CGG----UGGG---GGUAgCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 126201 | 0.66 | 0.711007 |
Target: 5'- cUCGGGAcGCGCCcgaucgcgcgaGCuCCCCGgguUCGaCACCc -3' miRNA: 3'- -AGCUCU-CGCGG-----------UG-GGGGU---AGCgGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 125497 | 0.73 | 0.300592 |
Target: 5'- -aGGGAGCGCCGCgaCCAUCacaaaCCACCg -3' miRNA: 3'- agCUCUCGCGGUGggGGUAGc----GGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 124879 | 0.7 | 0.441157 |
Target: 5'- gCGAuGGUucgcaucacgGCCuCCCCCcUCGCCGCCa -3' miRNA: 3'- aGCUcUCG----------CGGuGGGGGuAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 124721 | 0.67 | 0.641972 |
Target: 5'- -gGGGAG-GCCgugauGCgaaCCAUCGCCACCg -3' miRNA: 3'- agCUCUCgCGG-----UGgg-GGUAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 124668 | 0.67 | 0.622065 |
Target: 5'- aCGGGAGCcgcgggGUCAUCCCCG-CGaCCGCg -3' miRNA: 3'- aGCUCUCG------CGGUGGGGGUaGC-GGUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 124056 | 0.66 | 0.685578 |
Target: 5'- gCGAGAcGCGCgGCCCCUccacgguucgaagcgGgcacggcgCGCCACg -3' miRNA: 3'- aGCUCU-CGCGgUGGGGG---------------Ua-------GCGGUGg -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 123605 | 0.66 | 0.70127 |
Target: 5'- cCG-GGGCGUCcguugaaaucgACCCUCGUUucgggGCCACCg -3' miRNA: 3'- aGCuCUCGCGG-----------UGGGGGUAG-----CGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 121416 | 0.68 | 0.582391 |
Target: 5'- aUCGAGAGgGCguUUCCCGggggaGCUGCCa -3' miRNA: 3'- -AGCUCUCgCGguGGGGGUag---CGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 121245 | 0.68 | 0.602186 |
Target: 5'- aUCGAGAGUGgCAgcuCCCCCGggaaaCGCC-CUc -3' miRNA: 3'- -AGCUCUCGCgGU---GGGGGUa----GCGGuGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 120719 | 0.72 | 0.382129 |
Target: 5'- cCGuGGGCauagugucGUCGCCCUCAUCGUCGCUa -3' miRNA: 3'- aGCuCUCG--------CGGUGGGGGUAGCGGUGG- -5' |
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2887 | 3' | -60.5 | NC_001493.1 | + | 118745 | 0.7 | 0.467991 |
Target: 5'- gUCGAGGaUGCCAUCCCCGcgGCCGuCCc -3' miRNA: 3'- -AGCUCUcGCGGUGGGGGUagCGGU-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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