miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28870 3' -49.8 NC_006146.1 + 96257 0.71 0.902448
Target:  5'- aAUUGAGGGGGG--CGUGCAUCu- -3'
miRNA:   3'- -UGAUUCCCCCCugGUACGUAGcu -5'
28870 3' -49.8 NC_006146.1 + 134168 0.71 0.902448
Target:  5'- cCUAAGaGGGGGGCC-UGCAcgcCGAg -3'
miRNA:   3'- uGAUUC-CCCCCUGGuACGUa--GCU- -5'
28870 3' -49.8 NC_006146.1 + 57337 0.71 0.927207
Target:  5'- uCUGGGGGcGGGGCCccggGUGUCGGu -3'
miRNA:   3'- uGAUUCCC-CCCUGGua--CGUAGCU- -5'
28870 3' -49.8 NC_006146.1 + 170113 0.71 0.909041
Target:  5'- ---cAGGGGGGGCCGgcgggGCGUCc- -3'
miRNA:   3'- ugauUCCCCCCUGGUa----CGUAGcu -5'
28870 3' -49.8 NC_006146.1 + 92200 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 92320 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 92290 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 92260 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 92170 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 92140 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 92110 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 92051 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 92021 0.72 0.895591
Target:  5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3'
miRNA:   3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5'
28870 3' -49.8 NC_006146.1 + 93901 0.72 0.895591
Target:  5'- uGCggcAGGGGGGGCCA-GCA-CGGa -3'
miRNA:   3'- -UGau-UCCCCCCUGGUaCGUaGCU- -5'
28870 3' -49.8 NC_006146.1 + 169178 0.73 0.822837
Target:  5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3'
miRNA:   3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5'
28870 3' -49.8 NC_006146.1 + 168246 0.73 0.822837
Target:  5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3'
miRNA:   3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5'
28870 3' -49.8 NC_006146.1 + 167314 0.73 0.822837
Target:  5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3'
miRNA:   3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5'
28870 3' -49.8 NC_006146.1 + 51587 0.76 0.691966
Target:  5'- gGCcgAAGGGGGGACUGaggccgguUGCGUCGGg -3'
miRNA:   3'- -UGa-UUCCCCCCUGGU--------ACGUAGCU- -5'
28870 3' -49.8 NC_006146.1 + 36694 1.06 0.013351
Target:  5'- cACUAAGGGGGGACCAUGCAUCGAa -3'
miRNA:   3'- -UGAUUCCCCCCUGGUACGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.