Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28870 | 3' | -49.8 | NC_006146.1 | + | 92260 | 0.72 | 0.895591 |
Target: 5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3' miRNA: 3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 92290 | 0.72 | 0.895591 |
Target: 5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3' miRNA: 3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 92320 | 0.72 | 0.895591 |
Target: 5'- uGCUGGGGGGcGGGCCcgGCcUgGGg -3' miRNA: 3'- -UGAUUCCCC-CCUGGuaCGuAgCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 93901 | 0.72 | 0.895591 |
Target: 5'- uGCggcAGGGGGGGCCA-GCA-CGGa -3' miRNA: 3'- -UGau-UCCCCCCUGGUaCGUaGCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 96257 | 0.71 | 0.902448 |
Target: 5'- aAUUGAGGGGGG--CGUGCAUCu- -3' miRNA: 3'- -UGAUUCCCCCCugGUACGUAGcu -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 128741 | 0.66 | 0.995177 |
Target: 5'- --gGAGGGGGGugaguCCGUGCcaggcCGAc -3' miRNA: 3'- ugaUUCCCCCCu----GGUACGua---GCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 134168 | 0.71 | 0.902448 |
Target: 5'- cCUAAGaGGGGGGCC-UGCAcgcCGAg -3' miRNA: 3'- uGAUUC-CCCCCUGGuACGUa--GCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 141716 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 144794 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 145283 | 0.68 | 0.981064 |
Target: 5'- aGCUGAGGGGGG-CCucguagGUGUUGu -3' miRNA: 3'- -UGAUUCCCCCCuGGua----CGUAGCu -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 147872 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 150950 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 154028 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 157106 | 0.69 | 0.960199 |
Target: 5'- aGCUGAGGGGGG-CCGgggagggagGCGggGAg -3' miRNA: 3'- -UGAUUCCCCCCuGGUa--------CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 166870 | 0.67 | 0.986903 |
Target: 5'- gGCggGAGGGGGGAgCGgaggGCGagGAg -3' miRNA: 3'- -UGa-UUCCCCCCUgGUa---CGUagCU- -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 167314 | 0.73 | 0.822837 |
Target: 5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3' miRNA: 3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 168246 | 0.73 | 0.822837 |
Target: 5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3' miRNA: 3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 169178 | 0.73 | 0.822837 |
Target: 5'- cCUGcAGGGGGGGCCGgcgggGCGUCc- -3' miRNA: 3'- uGAU-UCCCCCCUGGUa----CGUAGcu -5' |
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28870 | 3' | -49.8 | NC_006146.1 | + | 170113 | 0.71 | 0.909041 |
Target: 5'- ---cAGGGGGGGCCGgcgggGCGUCc- -3' miRNA: 3'- ugauUCCCCCCUGGUa----CGUAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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