miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28876 3' -61.1 NC_006146.1 + 3731 0.66 0.727518
Target:  5'- cUCUGGGggCCGCGUggCCcuucaGCCCg-GGGu -3'
miRNA:   3'- -AGACCCa-GGUGCGaaGG-----CGGGgaCCC- -5'
28876 3' -61.1 NC_006146.1 + 99018 0.66 0.7086
Target:  5'- --aGGGUCCGCGUgacggCCGuguagaggccCCCCaGGGc -3'
miRNA:   3'- agaCCCAGGUGCGaa---GGC----------GGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 137619 0.67 0.66041
Target:  5'- cCUGGGUCCGCuGgUUCgGUucaCCUGGa -3'
miRNA:   3'- aGACCCAGGUG-CgAAGgCGg--GGACCc -5'
28876 3' -61.1 NC_006146.1 + 47180 0.66 0.727518
Target:  5'- aCUGGGgagagCC-CGCcgCCGCCCCg--- -3'
miRNA:   3'- aGACCCa----GGuGCGaaGGCGGGGaccc -5'
28876 3' -61.1 NC_006146.1 + 33950 0.67 0.66041
Target:  5'- gCUGGGUCCGCuggUCCGggugggcgugguCCgCUGGGu -3'
miRNA:   3'- aGACCCAGGUGcgaAGGC------------GGgGACCC- -5'
28876 3' -61.1 NC_006146.1 + 47250 0.66 0.746137
Target:  5'- --cGGGUCgACGUg---GCCCCUGGc -3'
miRNA:   3'- agaCCCAGgUGCGaaggCGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 125978 0.67 0.689446
Target:  5'- gCUGGGUCCGCacucGCggCUGCgaggCUUGGGa -3'
miRNA:   3'- aGACCCAGGUG----CGaaGGCGg---GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 135669 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135576 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135483 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135390 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135297 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135204 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 44867 0.77 0.212121
Target:  5'- --cGGGUCCcCGCUgagaaGCCCCUGGGc -3'
miRNA:   3'- agaCCCAGGuGCGAagg--CGGGGACCC- -5'
28876 3' -61.1 NC_006146.1 + 48235 0.66 0.714303
Target:  5'- cCUGGGUgagcgCCGCGCggagggcccccgCCGCCguCCUGGc -3'
miRNA:   3'- aGACCCA-----GGUGCGaa----------GGCGG--GGACCc -5'
28876 3' -61.1 NC_006146.1 + 161881 0.66 0.7086
Target:  5'- cCUGGGagacCCG-GCUUCCcuuuugggcaacGCCCCgUGGGa -3'
miRNA:   3'- aGACCCa---GGUgCGAAGG------------CGGGG-ACCC- -5'
28876 3' -61.1 NC_006146.1 + 125608 0.66 0.7086
Target:  5'- cUCUGGGUCUugGuCUggcggGCCUCaGGGg -3'
miRNA:   3'- -AGACCCAGGugC-GAagg--CGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 93590 0.67 0.699048
Target:  5'- cCUGGGcaUGCGCgacCCGCCgggcuCCUGGGg -3'
miRNA:   3'- aGACCCagGUGCGaa-GGCGG-----GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 169664 0.67 0.699048
Target:  5'- gCUGGGcguggcgggCGCGCguggcCCGCCCCcGGGu -3'
miRNA:   3'- aGACCCag-------GUGCGaa---GGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 167800 0.67 0.699048
Target:  5'- gCUGGGcguggcgggCGCGCguggcCCGCCCCcGGGu -3'
miRNA:   3'- aGACCCag-------GUGCGaa---GGCGGGGaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.