miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28876 3' -61.1 NC_006146.1 + 3443 0.71 0.470409
Target:  5'- gCUGGGcUCCACGgUcCCGCUCggGGGg -3'
miRNA:   3'- aGACCC-AGGUGCgAaGGCGGGgaCCC- -5'
28876 3' -61.1 NC_006146.1 + 33370 0.71 0.452741
Target:  5'- -gUGGGUCCGCcggGCcgCUGCCCCgcuccgggUGGGg -3'
miRNA:   3'- agACCCAGGUG---CGaaGGCGGGG--------ACCC- -5'
28876 3' -61.1 NC_006146.1 + 137434 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137155 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 108162 0.69 0.563322
Target:  5'- -gUGGGUCCGCGgggcUCCGgcuaUCCUGGGc -3'
miRNA:   3'- agACCCAGGUGCga--AGGCg---GGGACCC- -5'
28876 3' -61.1 NC_006146.1 + 67992 0.69 0.534773
Target:  5'- cUUGGGgcgcagCCACGCcacaCgGCCCCUGGc -3'
miRNA:   3'- aGACCCa-----GGUGCGaa--GgCGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 33170 0.73 0.347621
Target:  5'- gCUGGGcaccgCCGCGCcgCCGCUcgguCCUGGGc -3'
miRNA:   3'- aGACCCa----GGUGCGaaGGCGG----GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 137062 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 33294 0.7 0.516026
Target:  5'- gCUGGGcaccgCUGCGCcgCCGCUcgguCCUGGGg -3'
miRNA:   3'- aGACCCa----GGUGCGaaGGCGG----GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 136969 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 157639 0.73 0.347621
Target:  5'- cCUGGGUCUugGgcaCCaGCCCCUGGa -3'
miRNA:   3'- aGACCCAGGugCgaaGG-CGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 41506 0.7 0.488421
Target:  5'- gUCUGGGg-CAgGCUUCCGgCCCCaGaGGa -3'
miRNA:   3'- -AGACCCagGUgCGAAGGC-GGGGaC-CC- -5'
28876 3' -61.1 NC_006146.1 + 94639 0.74 0.305339
Target:  5'- --cGGGUCCAUGauggCCGCCCUgGGGa -3'
miRNA:   3'- agaCCCAGGUGCgaa-GGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 137527 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137341 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137248 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 47250 0.66 0.746137
Target:  5'- --cGGGUCgACGUg---GCCCCUGGc -3'
miRNA:   3'- agaCCCAGgUGCGaaggCGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 163186 0.68 0.621438
Target:  5'- --cGGGcaguggCUugGCUUCUGCCCCUcagaggagccGGGc -3'
miRNA:   3'- agaCCCa-----GGugCGAAGGCGGGGA----------CCC- -5'
28876 3' -61.1 NC_006146.1 + 45951 0.69 0.563322
Target:  5'- cUCUGGGgaccUCgACGCUcUCUGCCCg-GGGc -3'
miRNA:   3'- -AGACCC----AGgUGCGA-AGGCGGGgaCCC- -5'
28876 3' -61.1 NC_006146.1 + 33249 0.69 0.553756
Target:  5'- --cGGGUCCGCcggGCcgCUGCCCCgcuccgggUGGGg -3'
miRNA:   3'- agaCCCAGGUG---CGaaGGCGGGG--------ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.