miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28876 3' -61.1 NC_006146.1 + 44867 0.77 0.212121
Target:  5'- --cGGGUCCcCGCUgagaaGCCCCUGGGc -3'
miRNA:   3'- agaCCCAGGuGCGAagg--CGGGGACCC- -5'
28876 3' -61.1 NC_006146.1 + 136691 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 136876 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 47250 0.66 0.746137
Target:  5'- --cGGGUCgACGUg---GCCCCUGGc -3'
miRNA:   3'- agaCCCAGgUGCGaaggCGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 135483 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135576 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135761 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135854 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 136133 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 136598 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 136319 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 136040 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135204 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 136412 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135297 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135947 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 136505 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 136783 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135390 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135669 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.