miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28876 3' -61.1 NC_006146.1 + 413 0.67 0.699048
Target:  5'- --gGGGUCCGgggaagcccccCGCU--CGCCCCUcGGGu -3'
miRNA:   3'- agaCCCAGGU-----------GCGAagGCGGGGA-CCC- -5'
28876 3' -61.1 NC_006146.1 + 896 0.71 0.452741
Target:  5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3'
miRNA:   3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5'
28876 3' -61.1 NC_006146.1 + 1154 0.71 0.46153
Target:  5'- --aGGGUCCcCGgg-CCGCCCCgGGGc -3'
miRNA:   3'- agaCCCAGGuGCgaaGGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 1828 0.71 0.452741
Target:  5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3'
miRNA:   3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5'
28876 3' -61.1 NC_006146.1 + 2086 0.71 0.46153
Target:  5'- --aGGGUCCcCGgg-CCGCCCCgGGGc -3'
miRNA:   3'- agaCCCAGGuGCgaaGGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 2760 0.71 0.452741
Target:  5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3'
miRNA:   3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5'
28876 3' -61.1 NC_006146.1 + 3018 0.71 0.46153
Target:  5'- --aGGGUCCcCGgg-CCGCCCCgGGGc -3'
miRNA:   3'- agaCCCAGGuGCgaaGGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 3443 0.71 0.470409
Target:  5'- gCUGGGcUCCACGgUcCCGCUCggGGGg -3'
miRNA:   3'- aGACCC-AGGUGCgAaGGCGGGgaCCC- -5'
28876 3' -61.1 NC_006146.1 + 3692 0.71 0.452741
Target:  5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3'
miRNA:   3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5'
28876 3' -61.1 NC_006146.1 + 3731 0.66 0.727518
Target:  5'- cUCUGGGggCCGCGUggCCcuucaGCCCg-GGGu -3'
miRNA:   3'- -AGACCCa-GGUGCGaaGG-----CGGGgaCCC- -5'
28876 3' -61.1 NC_006146.1 + 8041 0.69 0.572933
Target:  5'- gCUGGcaCC-CGCUggacCCGgCCCUGGGg -3'
miRNA:   3'- aGACCcaGGuGCGAa---GGCgGGGACCC- -5'
28876 3' -61.1 NC_006146.1 + 16710 0.67 0.66041
Target:  5'- ---aGGUCCACGa---CGCCCCgGGGu -3'
miRNA:   3'- agacCCAGGUGCgaagGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 22598 0.66 0.755315
Target:  5'- gUCUGGcucUCCGCGCUcCUGCUggagcuccuguUCUGGGu -3'
miRNA:   3'- -AGACCc--AGGUGCGAaGGCGG-----------GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 24074 0.68 0.621438
Target:  5'- --cGGGcUCUACGCUggcgCgGCCucgCCUGGGa -3'
miRNA:   3'- agaCCC-AGGUGCGAa---GgCGG---GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 31858 1.1 0.001041
Target:  5'- cUCUGGGUCCACGCUUCCGCCCCUGGGa -3'
miRNA:   3'- -AGACCCAGGUGCGAAGGCGGGGACCC- -5'
28876 3' -61.1 NC_006146.1 + 33170 0.73 0.347621
Target:  5'- gCUGGGcaccgCCGCGCcgCCGCUcgguCCUGGGc -3'
miRNA:   3'- aGACCCa----GGUGCGaaGGCGG----GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 33249 0.69 0.553756
Target:  5'- --cGGGUCCGCcggGCcgCUGCCCCgcuccgggUGGGg -3'
miRNA:   3'- agaCCCAGGUG---CGaaGGCGGGG--------ACCC- -5'
28876 3' -61.1 NC_006146.1 + 33294 0.7 0.516026
Target:  5'- gCUGGGcaccgCUGCGCcgCCGCUcgguCCUGGGg -3'
miRNA:   3'- aGACCCa----GGUGCGaaGGCGG----GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 33370 0.71 0.452741
Target:  5'- -gUGGGUCCGCcggGCcgCUGCCCCgcuccgggUGGGg -3'
miRNA:   3'- agACCCAGGUG---CGaaGGCGGGG--------ACCC- -5'
28876 3' -61.1 NC_006146.1 + 33416 0.7 0.506751
Target:  5'- cCUGGGcaccgCUGCGCcgCCGCUcgguCCUGGGg -3'
miRNA:   3'- aGACCCa----GGUGCGaaGGCGG----GGACCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.