miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28876 3' -61.1 NC_006146.1 + 170323 0.66 0.727518
Target:  5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3'
miRNA:   3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5'
28876 3' -61.1 NC_006146.1 + 169664 0.67 0.699048
Target:  5'- gCUGGGcguggcgggCGCGCguggcCCGCCCCcGGGu -3'
miRNA:   3'- aGACCCag-------GUGCGaa---GGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 169392 0.66 0.727518
Target:  5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3'
miRNA:   3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5'
28876 3' -61.1 NC_006146.1 + 168732 0.67 0.699048
Target:  5'- gCUGGGcguggcgggCGCGCguggcCCGCCCCcGGGu -3'
miRNA:   3'- aGACCCag-------GUGCGaa---GGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 168460 0.66 0.727518
Target:  5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3'
miRNA:   3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5'
28876 3' -61.1 NC_006146.1 + 167800 0.67 0.699048
Target:  5'- gCUGGGcguggcgggCGCGCguggcCCGCCCCcGGGu -3'
miRNA:   3'- aGACCCag-------GUGCGaa---GGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 167528 0.66 0.727518
Target:  5'- --cGGG-CCGCGCccCCgGCCCCucuccUGGGa -3'
miRNA:   3'- agaCCCaGGUGCGaaGG-CGGGG-----ACCC- -5'
28876 3' -61.1 NC_006146.1 + 163186 0.68 0.621438
Target:  5'- --cGGGcaguggCUugGCUUCUGCCCCUcagaggagccGGGc -3'
miRNA:   3'- agaCCCa-----GGugCGAAGGCGGGGA----------CCC- -5'
28876 3' -61.1 NC_006146.1 + 161948 0.66 0.7086
Target:  5'- cCUGGGagacCCG-GCUUCCcuuucgggcaacGCCCCgUGGGa -3'
miRNA:   3'- aGACCCa---GGUgCGAAGG------------CGGGG-ACCC- -5'
28876 3' -61.1 NC_006146.1 + 161881 0.66 0.7086
Target:  5'- cCUGGGagacCCG-GCUUCCcuuuugggcaacGCCCCgUGGGa -3'
miRNA:   3'- aGACCCa---GGUgCGAAGG------------CGGGG-ACCC- -5'
28876 3' -61.1 NC_006146.1 + 157639 0.73 0.347621
Target:  5'- cCUGGGUCUugGgcaCCaGCCCCUGGa -3'
miRNA:   3'- aGACCCAGGugCgaaGG-CGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 154176 0.67 0.6798
Target:  5'- uUCUGuaGGUCCACaGUaUCCaCCCCgGGGc -3'
miRNA:   3'- -AGAC--CCAGGUG-CGaAGGcGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 141304 0.66 0.727518
Target:  5'- --cGGGUucagCCugGCUga-GCCCCcGGGg -3'
miRNA:   3'- agaCCCA----GGugCGAaggCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 137619 0.67 0.66041
Target:  5'- cCUGGGUCCGCuGgUUCgGUucaCCUGGa -3'
miRNA:   3'- aGACCCAGGUG-CgAAGgCGg--GGACCc -5'
28876 3' -61.1 NC_006146.1 + 137527 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137434 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137341 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137248 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137155 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137062 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.