miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28876 3' -61.1 NC_006146.1 + 33950 0.67 0.66041
Target:  5'- gCUGGGUCCGCuggUCCGggugggcgugguCCgCUGGGu -3'
miRNA:   3'- aGACCCAGGUGcgaAGGC------------GGgGACCC- -5'
28876 3' -61.1 NC_006146.1 + 41506 0.7 0.488421
Target:  5'- gUCUGGGg-CAgGCUUCCGgCCCCaGaGGa -3'
miRNA:   3'- -AGACCCagGUgCGAAGGC-GGGGaC-CC- -5'
28876 3' -61.1 NC_006146.1 + 42946 0.66 0.746137
Target:  5'- ---cGGUCCcUGCccUCCGCCCC-GGGc -3'
miRNA:   3'- agacCCAGGuGCGa-AGGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 44867 0.77 0.212121
Target:  5'- --cGGGUCCcCGCUgagaaGCCCCUGGGc -3'
miRNA:   3'- agaCCCAGGuGCGAagg--CGGGGACCC- -5'
28876 3' -61.1 NC_006146.1 + 45951 0.69 0.563322
Target:  5'- cUCUGGGgaccUCgACGCUcUCUGCCCg-GGGc -3'
miRNA:   3'- -AGACCC----AGgUGCGA-AGGCGGGgaCCC- -5'
28876 3' -61.1 NC_006146.1 + 46757 0.66 0.746137
Target:  5'- --aGGGUCCuCGCcucCCGaCCCC-GGGc -3'
miRNA:   3'- agaCCCAGGuGCGaa-GGC-GGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 47180 0.66 0.727518
Target:  5'- aCUGGGgagagCC-CGCcgCCGCCCCg--- -3'
miRNA:   3'- aGACCCa----GGuGCGaaGGCGGGGaccc -5'
28876 3' -61.1 NC_006146.1 + 47250 0.66 0.746137
Target:  5'- --cGGGUCgACGUg---GCCCCUGGc -3'
miRNA:   3'- agaCCCAGgUGCGaaggCGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 48235 0.66 0.714303
Target:  5'- cCUGGGUgagcgCCGCGCggagggcccccgCCGCCguCCUGGc -3'
miRNA:   3'- aGACCCA-----GGUGCGaa----------GGCGG--GGACCc -5'
28876 3' -61.1 NC_006146.1 + 67992 0.69 0.534773
Target:  5'- cUUGGGgcgcagCCACGCcacaCgGCCCCUGGc -3'
miRNA:   3'- aGACCCa-----GGUGCGaa--GgCGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 74398 0.68 0.631188
Target:  5'- uUCUugGGGUCCuuGCGCUgggaguUCUGCUCCaggUGGGc -3'
miRNA:   3'- -AGA--CCCAGG--UGCGA------AGGCGGGG---ACCC- -5'
28876 3' -61.1 NC_006146.1 + 82835 0.66 0.718092
Target:  5'- gUCUGGGUUUuauauUGCgauugucCCGCCCCUGa- -3'
miRNA:   3'- -AGACCCAGGu----GCGaa-----GGCGGGGACcc -5'
28876 3' -61.1 NC_006146.1 + 93590 0.67 0.699048
Target:  5'- cCUGGGcaUGCGCgacCCGCCgggcuCCUGGGg -3'
miRNA:   3'- aGACCCagGUGCGaa-GGCGG-----GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 94639 0.74 0.305339
Target:  5'- --cGGGUCCAUGauggCCGCCCUgGGGa -3'
miRNA:   3'- agaCCCAGGUGCgaa-GGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 95061 0.66 0.736869
Target:  5'- gUUUGuGGUCCA-Gag-CUGCCCCUGGu -3'
miRNA:   3'- -AGAC-CCAGGUgCgaaGGCGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 99018 0.66 0.7086
Target:  5'- --aGGGUCCGCGUgacggCCGuguagaggccCCCCaGGGc -3'
miRNA:   3'- agaCCCAGGUGCGaa---GGC----------GGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 102381 0.72 0.409399
Target:  5'- cUCcGGGUCCucggggaGCUggugguaUCUGUCCCUGGGg -3'
miRNA:   3'- -AGaCCCAGGug-----CGA-------AGGCGGGGACCC- -5'
28876 3' -61.1 NC_006146.1 + 108162 0.69 0.563322
Target:  5'- -gUGGGUCCGCGgggcUCCGgcuaUCCUGGGc -3'
miRNA:   3'- agACCCAGGUGCga--AGGCg---GGGACCC- -5'
28876 3' -61.1 NC_006146.1 + 113121 0.68 0.640937
Target:  5'- --gGGGgaugCCAUGuCUUCCGCCggUGGGu -3'
miRNA:   3'- agaCCCa---GGUGC-GAAGGCGGggACCC- -5'
28876 3' -61.1 NC_006146.1 + 114322 0.68 0.601969
Target:  5'- --cGGGcUCgGCGCccggCCGCCCCUGacGGa -3'
miRNA:   3'- agaCCC-AGgUGCGaa--GGCGGGGAC--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.