miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28876 3' -61.1 NC_006146.1 + 137527 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137434 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137341 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137248 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 135390 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137155 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 137062 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 136969 0.77 0.212121
Target:  5'- cCUGGGUCCGCuGCc-CCGCUCCggcgGGGg -3'
miRNA:   3'- aGACCCAGGUG-CGaaGGCGGGGa---CCC- -5'
28876 3' -61.1 NC_006146.1 + 94639 0.74 0.305339
Target:  5'- --cGGGUCCAUGauggCCGCCCUgGGGa -3'
miRNA:   3'- agaCCCAGGUGCgaa-GGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 33170 0.73 0.347621
Target:  5'- gCUGGGcaccgCCGCGCcgCCGCUcgguCCUGGGc -3'
miRNA:   3'- aGACCCa----GGUGCGaaGGCGG----GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 157639 0.73 0.347621
Target:  5'- cCUGGGUCUugGgcaCCaGCCCCUGGa -3'
miRNA:   3'- aGACCCAGGugCgaaGG-CGGGGACCc -5'
28876 3' -61.1 NC_006146.1 + 102381 0.72 0.409399
Target:  5'- cUCcGGGUCCucggggaGCUggugguaUCUGUCCCUGGGg -3'
miRNA:   3'- -AGaCCCAGGug-----CGA-------AGGCGGGGACCC- -5'
28876 3' -61.1 NC_006146.1 + 33370 0.71 0.452741
Target:  5'- -gUGGGUCCGCcggGCcgCUGCCCCgcuccgggUGGGg -3'
miRNA:   3'- agACCCAGGUG---CGaaGGCGGGG--------ACCC- -5'
28876 3' -61.1 NC_006146.1 + 3692 0.71 0.452741
Target:  5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3'
miRNA:   3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5'
28876 3' -61.1 NC_006146.1 + 2760 0.71 0.452741
Target:  5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3'
miRNA:   3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5'
28876 3' -61.1 NC_006146.1 + 1828 0.71 0.452741
Target:  5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3'
miRNA:   3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5'
28876 3' -61.1 NC_006146.1 + 896 0.71 0.452741
Target:  5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3'
miRNA:   3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5'
28876 3' -61.1 NC_006146.1 + 3018 0.71 0.46153
Target:  5'- --aGGGUCCcCGgg-CCGCCCCgGGGc -3'
miRNA:   3'- agaCCCAGGuGCgaaGGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 1154 0.71 0.46153
Target:  5'- --aGGGUCCcCGgg-CCGCCCCgGGGc -3'
miRNA:   3'- agaCCCAGGuGCgaaGGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 2086 0.71 0.46153
Target:  5'- --aGGGUCCcCGgg-CCGCCCCgGGGc -3'
miRNA:   3'- agaCCCAGGuGCgaaGGCGGGGaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.