miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28876 3' -61.1 NC_006146.1 + 125608 0.66 0.7086
Target:  5'- cUCUGGGUCUugGuCUggcggGCCUCaGGGg -3'
miRNA:   3'- -AGACCCAGGugC-GAagg--CGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 99018 0.66 0.7086
Target:  5'- --aGGGUCCGCGUgacggCCGuguagaggccCCCCaGGGc -3'
miRNA:   3'- agaCCCAGGUGCGaa---GGC----------GGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 129631 0.66 0.707647
Target:  5'- --cGGGUCCuccgcggGCGCgugcUCCGCCC--GGGa -3'
miRNA:   3'- agaCCCAGG-------UGCGa---AGGCGGGgaCCC- -5'
28876 3' -61.1 NC_006146.1 + 169664 0.67 0.699048
Target:  5'- gCUGGGcguggcgggCGCGCguggcCCGCCCCcGGGu -3'
miRNA:   3'- aGACCCag-------GUGCGaa---GGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 413 0.67 0.699048
Target:  5'- --gGGGUCCGgggaagcccccCGCU--CGCCCCUcGGGu -3'
miRNA:   3'- agaCCCAGGU-----------GCGAagGCGGGGA-CCC- -5'
28876 3' -61.1 NC_006146.1 + 93590 0.67 0.699048
Target:  5'- cCUGGGcaUGCGCgacCCGCCgggcuCCUGGGg -3'
miRNA:   3'- aGACCCagGUGCGaa-GGCGG-----GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 168732 0.67 0.699048
Target:  5'- gCUGGGcguggcgggCGCGCguggcCCGCCCCcGGGu -3'
miRNA:   3'- aGACCCag-------GUGCGaa---GGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 167800 0.67 0.699048
Target:  5'- gCUGGGcguggcgggCGCGCguggcCCGCCCCcGGGu -3'
miRNA:   3'- aGACCCag-------GUGCGaa---GGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 125978 0.67 0.689446
Target:  5'- gCUGGGUCCGCacucGCggCUGCgaggCUUGGGa -3'
miRNA:   3'- aGACCCAGGUG----CGaaGGCGg---GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 154176 0.67 0.6798
Target:  5'- uUCUGuaGGUCCACaGUaUCCaCCCCgGGGc -3'
miRNA:   3'- -AGAC--CCAGGUG-CGaAGGcGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 16710 0.67 0.66041
Target:  5'- ---aGGUCCACGa---CGCCCCgGGGu -3'
miRNA:   3'- agacCCAGGUGCgaagGCGGGGaCCC- -5'
28876 3' -61.1 NC_006146.1 + 33950 0.67 0.66041
Target:  5'- gCUGGGUCCGCuggUCCGggugggcgugguCCgCUGGGu -3'
miRNA:   3'- aGACCCAGGUGcgaAGGC------------GGgGACCC- -5'
28876 3' -61.1 NC_006146.1 + 137619 0.67 0.66041
Target:  5'- cCUGGGUCCGCuGgUUCgGUucaCCUGGa -3'
miRNA:   3'- aGACCCAGGUG-CgAAGgCGg--GGACCc -5'
28876 3' -61.1 NC_006146.1 + 113121 0.68 0.640937
Target:  5'- --gGGGgaugCCAUGuCUUCCGCCggUGGGu -3'
miRNA:   3'- agaCCCa---GGUGC-GAAGGCGGggACCC- -5'
28876 3' -61.1 NC_006146.1 + 74398 0.68 0.631188
Target:  5'- uUCUugGGGUCCuuGCGCUgggaguUCUGCUCCaggUGGGc -3'
miRNA:   3'- -AGA--CCCAGG--UGCGA------AGGCGGGG---ACCC- -5'
28876 3' -61.1 NC_006146.1 + 163186 0.68 0.621438
Target:  5'- --cGGGcaguggCUugGCUUCUGCCCCUcagaggagccGGGc -3'
miRNA:   3'- agaCCCa-----GGugCGAAGGCGGGGA----------CCC- -5'
28876 3' -61.1 NC_006146.1 + 24074 0.68 0.621438
Target:  5'- --cGGGcUCUACGCUggcgCgGCCucgCCUGGGa -3'
miRNA:   3'- agaCCC-AGGUGCGAa---GgCGG---GGACCC- -5'
28876 3' -61.1 NC_006146.1 + 114322 0.68 0.601969
Target:  5'- --cGGGcUCgGCGCccggCCGCCCCUGacGGa -3'
miRNA:   3'- agaCCC-AGgUGCGaa--GGCGGGGAC--CC- -5'
28876 3' -61.1 NC_006146.1 + 8041 0.69 0.572933
Target:  5'- gCUGGcaCC-CGCUggacCCGgCCCUGGGg -3'
miRNA:   3'- aGACCcaGGuGCGAa---GGCgGGGACCC- -5'
28876 3' -61.1 NC_006146.1 + 45951 0.69 0.563322
Target:  5'- cUCUGGGgaccUCgACGCUcUCUGCCCg-GGGc -3'
miRNA:   3'- -AGACCC----AGgUGCGA-AGGCGGGgaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.