Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28876 | 3' | -61.1 | NC_006146.1 | + | 102381 | 0.72 | 0.409399 |
Target: 5'- cUCcGGGUCCucggggaGCUggugguaUCUGUCCCUGGGg -3' miRNA: 3'- -AGaCCCAGGug-----CGA-------AGGCGGGGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 8041 | 0.69 | 0.572933 |
Target: 5'- gCUGGcaCC-CGCUggacCCGgCCCUGGGg -3' miRNA: 3'- aGACCcaGGuGCGAa---GGCgGGGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 3018 | 0.71 | 0.46153 |
Target: 5'- --aGGGUCCcCGgg-CCGCCCCgGGGc -3' miRNA: 3'- agaCCCAGGuGCgaaGGCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 2086 | 0.71 | 0.46153 |
Target: 5'- --aGGGUCCcCGgg-CCGCCCCgGGGc -3' miRNA: 3'- agaCCCAGGuGCgaaGGCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 1154 | 0.71 | 0.46153 |
Target: 5'- --aGGGUCCcCGgg-CCGCCCCgGGGc -3' miRNA: 3'- agaCCCAGGuGCgaaGGCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 3692 | 0.71 | 0.452741 |
Target: 5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3' miRNA: 3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 2760 | 0.71 | 0.452741 |
Target: 5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3' miRNA: 3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 1828 | 0.71 | 0.452741 |
Target: 5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3' miRNA: 3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 896 | 0.71 | 0.452741 |
Target: 5'- aCgGGGgaaggCCGCGCg-CCGCCCCccGGGa -3' miRNA: 3'- aGaCCCa----GGUGCGaaGGCGGGGa-CCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 114322 | 0.68 | 0.601969 |
Target: 5'- --cGGGcUCgGCGCccggCCGCCCCUGacGGa -3' miRNA: 3'- agaCCC-AGgUGCGaa--GGCGGGGAC--CC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 24074 | 0.68 | 0.621438 |
Target: 5'- --cGGGcUCUACGCUggcgCgGCCucgCCUGGGa -3' miRNA: 3'- agaCCC-AGGUGCGAa---GgCGG---GGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 74398 | 0.68 | 0.631188 |
Target: 5'- uUCUugGGGUCCuuGCGCUgggaguUCUGCUCCaggUGGGc -3' miRNA: 3'- -AGA--CCCAGG--UGCGA------AGGCGGGG---ACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 42946 | 0.66 | 0.746137 |
Target: 5'- ---cGGUCCcUGCccUCCGCCCC-GGGc -3' miRNA: 3'- agacCCAGGuGCGa-AGGCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 124458 | 0.66 | 0.727518 |
Target: 5'- ---cGGcCUACGCcgCCGCCuuCCUGGGg -3' miRNA: 3'- agacCCaGGUGCGaaGGCGG--GGACCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 82835 | 0.66 | 0.718092 |
Target: 5'- gUCUGGGUUUuauauUGCgauugucCCGCCCCUGa- -3' miRNA: 3'- -AGACCCAGGu----GCGaa-----GGCGGGGACcc -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 136811 | 0.66 | 0.718092 |
Target: 5'- gCUGGGU-CGCGg--CUGCCCCccGGGa -3' miRNA: 3'- aGACCCAgGUGCgaaGGCGGGGa-CCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 129631 | 0.66 | 0.707647 |
Target: 5'- --cGGGUCCuccgcggGCGCgugcUCCGCCC--GGGa -3' miRNA: 3'- agaCCCAGG-------UGCGa---AGGCGGGgaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 413 | 0.67 | 0.699048 |
Target: 5'- --gGGGUCCGgggaagcccccCGCU--CGCCCCUcGGGu -3' miRNA: 3'- agaCCCAGGU-----------GCGAagGCGGGGA-CCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 16710 | 0.67 | 0.66041 |
Target: 5'- ---aGGUCCACGa---CGCCCCgGGGu -3' miRNA: 3'- agacCCAGGUGCgaagGCGGGGaCCC- -5' |
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28876 | 3' | -61.1 | NC_006146.1 | + | 113121 | 0.68 | 0.640937 |
Target: 5'- --gGGGgaugCCAUGuCUUCCGCCggUGGGu -3' miRNA: 3'- agaCCCa---GGUGC-GAAGGCGGggACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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