miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28876 5' -53.4 NC_006146.1 + 69412 0.66 0.961898
Target:  5'- aUCCUGacgagcAGGGCcaccGAGCACA-GGAUg- -3'
miRNA:   3'- aAGGAU------UCCCGc---CUCGUGUaCCUAau -5'
28876 5' -53.4 NC_006146.1 + 123194 0.66 0.961898
Target:  5'- aUCUcGAGGGCcGAGCACAgggcggUGGAc-- -3'
miRNA:   3'- aAGGaUUCCCGcCUCGUGU------ACCUaau -5'
28876 5' -53.4 NC_006146.1 + 89582 0.66 0.958183
Target:  5'- -----uGGGGCGGAGgACuUGGGUUGc -3'
miRNA:   3'- aaggauUCCCGCCUCgUGuACCUAAU- -5'
28876 5' -53.4 NC_006146.1 + 9622 0.66 0.954228
Target:  5'- aUUUCUGGGGGUGuaaGGCACgcGUGGAUg- -3'
miRNA:   3'- -AAGGAUUCCCGCc--UCGUG--UACCUAau -5'
28876 5' -53.4 NC_006146.1 + 34593 0.66 0.950027
Target:  5'- -aCCUAGuGGGUGGAGC-C-UGGAg-- -3'
miRNA:   3'- aaGGAUU-CCCGCCUCGuGuACCUaau -5'
28876 5' -53.4 NC_006146.1 + 103430 0.66 0.945577
Target:  5'- cUCCUGgaccGGGGCuucgcGGAGCACAUGc---- -3'
miRNA:   3'- aAGGAU----UCCCG-----CCUCGUGUACcuaau -5'
28876 5' -53.4 NC_006146.1 + 115679 0.67 0.940874
Target:  5'- -aCCUGAGGGCGGAGgCAgA-GGc--- -3'
miRNA:   3'- aaGGAUUCCCGCCUC-GUgUaCCuaau -5'
28876 5' -53.4 NC_006146.1 + 161727 0.67 0.940874
Target:  5'- -gCUUGGGGGUGGguGGCACGgugGGAg-- -3'
miRNA:   3'- aaGGAUUCCCGCC--UCGUGUa--CCUaau -5'
28876 5' -53.4 NC_006146.1 + 41262 0.67 0.935917
Target:  5'- aUUCCc--GGGCGGAGCACGcgcccgcGGAg-- -3'
miRNA:   3'- -AAGGauuCCCGCCUCGUGUa------CCUaau -5'
28876 5' -53.4 NC_006146.1 + 45061 0.67 0.935917
Target:  5'- -cCCUAGGGGCGGcugaGGUGCcucGUGGGg-- -3'
miRNA:   3'- aaGGAUUCCCGCC----UCGUG---UACCUaau -5'
28876 5' -53.4 NC_006146.1 + 33028 0.67 0.935407
Target:  5'- -cCCUGccggcccGGGGCGGGGC-CcgGGAc-- -3'
miRNA:   3'- aaGGAU-------UCCCGCCUCGuGuaCCUaau -5'
28876 5' -53.4 NC_006146.1 + 94699 0.67 0.925231
Target:  5'- gUUCUuGGGGUGGGccuGC-CAUGGAUUGa -3'
miRNA:   3'- aAGGAuUCCCGCCU---CGuGUACCUAAU- -5'
28876 5' -53.4 NC_006146.1 + 70541 0.68 0.907274
Target:  5'- gUCg-GAGGGCGGugguggGGUAUAUGGGUUGu -3'
miRNA:   3'- aAGgaUUCCCGCC------UCGUGUACCUAAU- -5'
28876 5' -53.4 NC_006146.1 + 167393 0.68 0.907273
Target:  5'- cUCCcGAGGGCGGGGC-CG-GGGc-- -3'
miRNA:   3'- aAGGaUUCCCGCCUCGuGUaCCUaau -5'
28876 5' -53.4 NC_006146.1 + 168325 0.68 0.907273
Target:  5'- cUCCcGAGGGCGGGGC-CG-GGGc-- -3'
miRNA:   3'- aAGGaUUCCCGCCUCGuGUaCCUaau -5'
28876 5' -53.4 NC_006146.1 + 169257 0.68 0.907273
Target:  5'- cUCCcGAGGGCGGGGC-CG-GGGc-- -3'
miRNA:   3'- aAGGaUUCCCGCCUCGuGUaCCUaau -5'
28876 5' -53.4 NC_006146.1 + 170188 0.68 0.907273
Target:  5'- cUCCcGAGGGCGGGGC-CG-GGGc-- -3'
miRNA:   3'- aAGGaUUCCCGCCUCGuGUaCCUaau -5'
28876 5' -53.4 NC_006146.1 + 66669 0.68 0.894032
Target:  5'- aUCCUGaggGGGGCGGGGCACc------- -3'
miRNA:   3'- aAGGAU---UCCCGCCUCGUGuaccuaau -5'
28876 5' -53.4 NC_006146.1 + 162040 0.68 0.887039
Target:  5'- -gCCUGGGGGCgGGGGCAgGcuguuuaaccUGGAUg- -3'
miRNA:   3'- aaGGAUUCCCG-CCUCGUgU----------ACCUAau -5'
28876 5' -53.4 NC_006146.1 + 142561 0.69 0.864625
Target:  5'- -gCCUAGGcuaGGCGGAGCcuGCGUgcGGAUUGg -3'
miRNA:   3'- aaGGAUUC---CCGCCUCG--UGUA--CCUAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.