Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28876 | 5' | -53.4 | NC_006146.1 | + | 31893 | 1.05 | 0.007778 |
Target: 5'- uUUCCUAAGGGCGGAGCACAUGGAUUAg -3' miRNA: 3'- -AAGGAUUCCCGCCUCGUGUACCUAAU- -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 135725 | 0.85 | 0.141831 |
Target: 5'- gUUUCUAAaGGCGGGGCACAUGGAUUAg -3' miRNA: 3'- -AAGGAUUcCCGCCUCGUGUACCUAAU- -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 109499 | 0.77 | 0.448141 |
Target: 5'- -aCCUGAGGGCGGc-CACGUGGAa-- -3' miRNA: 3'- aaGGAUUCCCGCCucGUGUACCUaau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 150500 | 0.73 | 0.621423 |
Target: 5'- -cCCUGucGGaGGCGGAGgGCAUGGGUa- -3' miRNA: 3'- aaGGAU--UC-CCGCCUCgUGUACCUAau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 57334 | 0.7 | 0.786037 |
Target: 5'- cUCuCUGGGGGCGGGGC-CccGGGUg- -3' miRNA: 3'- aAG-GAUUCCCGCCUCGuGuaCCUAau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 139041 | 0.69 | 0.840183 |
Target: 5'- aUCCcAGGGGCGGAa-GCGUGGAc-- -3' miRNA: 3'- aAGGaUUCCCGCCUcgUGUACCUaau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 108160 | 0.69 | 0.856695 |
Target: 5'- -cCCUGAGGGCaaagaaGAGCACAgcacUGGAg-- -3' miRNA: 3'- aaGGAUUCCCGc-----CUCGUGU----ACCUaau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 142561 | 0.69 | 0.864625 |
Target: 5'- -gCCUAGGcuaGGCGGAGCcuGCGUgcGGAUUGg -3' miRNA: 3'- aaGGAUUC---CCGCCUCG--UGUA--CCUAAU- -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 162040 | 0.68 | 0.887039 |
Target: 5'- -gCCUGGGGGCgGGGGCAgGcuguuuaaccUGGAUg- -3' miRNA: 3'- aaGGAUUCCCG-CCUCGUgU----------ACCUAau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 66669 | 0.68 | 0.894032 |
Target: 5'- aUCCUGaggGGGGCGGGGCACc------- -3' miRNA: 3'- aAGGAU---UCCCGCCUCGUGuaccuaau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 168325 | 0.68 | 0.907273 |
Target: 5'- cUCCcGAGGGCGGGGC-CG-GGGc-- -3' miRNA: 3'- aAGGaUUCCCGCCUCGuGUaCCUaau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 169257 | 0.68 | 0.907273 |
Target: 5'- cUCCcGAGGGCGGGGC-CG-GGGc-- -3' miRNA: 3'- aAGGaUUCCCGCCUCGuGUaCCUaau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 167393 | 0.68 | 0.907273 |
Target: 5'- cUCCcGAGGGCGGGGC-CG-GGGc-- -3' miRNA: 3'- aAGGaUUCCCGCCUCGuGUaCCUaau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 170188 | 0.68 | 0.907273 |
Target: 5'- cUCCcGAGGGCGGGGC-CG-GGGc-- -3' miRNA: 3'- aAGGaUUCCCGCCUCGuGUaCCUaau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 70541 | 0.68 | 0.907274 |
Target: 5'- gUCg-GAGGGCGGugguggGGUAUAUGGGUUGu -3' miRNA: 3'- aAGgaUUCCCGCC------UCGUGUACCUAAU- -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 94699 | 0.67 | 0.925231 |
Target: 5'- gUUCUuGGGGUGGGccuGC-CAUGGAUUGa -3' miRNA: 3'- aAGGAuUCCCGCCU---CGuGUACCUAAU- -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 33028 | 0.67 | 0.935407 |
Target: 5'- -cCCUGccggcccGGGGCGGGGC-CcgGGAc-- -3' miRNA: 3'- aaGGAU-------UCCCGCCUCGuGuaCCUaau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 45061 | 0.67 | 0.935917 |
Target: 5'- -cCCUAGGGGCGGcugaGGUGCcucGUGGGg-- -3' miRNA: 3'- aaGGAUUCCCGCC----UCGUG---UACCUaau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 41262 | 0.67 | 0.935917 |
Target: 5'- aUUCCc--GGGCGGAGCACGcgcccgcGGAg-- -3' miRNA: 3'- -AAGGauuCCCGCCUCGUGUa------CCUaau -5' |
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28876 | 5' | -53.4 | NC_006146.1 | + | 115679 | 0.67 | 0.940874 |
Target: 5'- -aCCUGAGGGCGGAGgCAgA-GGc--- -3' miRNA: 3'- aaGGAUUCCCGCCUC-GUgUaCCuaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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