Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28876 | 5' | -53.4 | NC_006146.1 | + | 161727 | 0.67 | 0.940874 |
|
Target: 5'- -gCUUGGGGGUGGguGGCACGgugGGAg-- -3' miRNA: 3'- aaGGAUUCCCGCC--UCGUGUa--CCUaau -5' |
|||||||
| 28876 | 5' | -53.4 | NC_006146.1 | + | 103430 | 0.66 | 0.945577 |
|
Target: 5'- cUCCUGgaccGGGGCuucgcGGAGCACAUGc---- -3' miRNA: 3'- aAGGAU----UCCCG-----CCUCGUGUACcuaau -5' |
|||||||
| 28876 | 5' | -53.4 | NC_006146.1 | + | 34593 | 0.66 | 0.950027 |
|
Target: 5'- -aCCUAGuGGGUGGAGC-C-UGGAg-- -3' miRNA: 3'- aaGGAUU-CCCGCCUCGuGuACCUaau -5' |
|||||||
| 28876 | 5' | -53.4 | NC_006146.1 | + | 9622 | 0.66 | 0.954228 |
|
Target: 5'- aUUUCUGGGGGUGuaaGGCACgcGUGGAUg- -3' miRNA: 3'- -AAGGAUUCCCGCc--UCGUG--UACCUAau -5' |
|||||||
| 28876 | 5' | -53.4 | NC_006146.1 | + | 89582 | 0.66 | 0.958183 |
|
Target: 5'- -----uGGGGCGGAGgACuUGGGUUGc -3' miRNA: 3'- aaggauUCCCGCCUCgUGuACCUAAU- -5' |
|||||||
| 28876 | 5' | -53.4 | NC_006146.1 | + | 69412 | 0.66 | 0.961898 |
|
Target: 5'- aUCCUGacgagcAGGGCcaccGAGCACA-GGAUg- -3' miRNA: 3'- aAGGAU------UCCCGc---CUCGUGUaCCUAau -5' |
|||||||
| 28876 | 5' | -53.4 | NC_006146.1 | + | 123194 | 0.66 | 0.961898 |
|
Target: 5'- aUCUcGAGGGCcGAGCACAgggcggUGGAc-- -3' miRNA: 3'- aAGGaUUCCCGcCUCGUGU------ACCUaau -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home