Results 21 - 40 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 90615 | 0.66 | 0.975394 |
Target: 5'- aUGGAC-GGUGcgcUCG-GGGUCAugagccacaucaaGCCCg -3' miRNA: 3'- gACCUGuCCACu--AGCuCCUAGU-------------UGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 133706 | 0.66 | 0.98253 |
Target: 5'- cCUGGACGcGGccccgaaacUGAUCGAGugggaGGUCucgggGACCCg -3' miRNA: 3'- -GACCUGU-CC---------ACUAGCUC-----CUAG-----UUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 82418 | 0.67 | 0.963656 |
Target: 5'- aUGGACagaacGGGuUGAacgcgacaauaUCGGGGGUggcCAGCCCg -3' miRNA: 3'- gACCUG-----UCC-ACU-----------AGCUCCUA---GUUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 131898 | 0.66 | 0.969175 |
Target: 5'- aUGGACAggaaggucucGGUGAgugCGGGGAaggucuccgcgccaUCaAACCCc -3' miRNA: 3'- gACCUGU----------CCACUa--GCUCCU--------------AG-UUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 88854 | 0.66 | 0.975653 |
Target: 5'- aCUGGACgagaaaacaaAGG-GAuUCGGGGA--GACCCu -3' miRNA: 3'- -GACCUG----------UCCaCU-AGCUCCUagUUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 3351 | 0.67 | 0.952303 |
Target: 5'- -cGGGguGGUGAUCGAcGAUguacACCCu -3' miRNA: 3'- gaCCUguCCACUAGCUcCUAgu--UGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 109158 | 0.67 | 0.966333 |
Target: 5'- cCUGGACAGccgccgcaCGGGGAgagauggCGACCCg -3' miRNA: 3'- -GACCUGUCcacua---GCUCCUa------GUUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 15437 | 0.66 | 0.978134 |
Target: 5'- -cGGACGGG-GAguucugcuUCGGGGA-CGGCgCCu -3' miRNA: 3'- gaCCUGUCCaCU--------AGCUCCUaGUUG-GG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 37548 | 0.72 | 0.784449 |
Target: 5'- aUGGAgGGGUcGUCGAccGGGUC-GCCCg -3' miRNA: 3'- gACCUgUCCAcUAGCU--CCUAGuUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 113307 | 0.68 | 0.948042 |
Target: 5'- -aGGuccACAGGgagGAcaCGGGGAUCGugCCg -3' miRNA: 3'- gaCC---UGUCCa--CUa-GCUCCUAGUugGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 113436 | 0.68 | 0.943536 |
Target: 5'- gUGGAaAGGgGGguugCGAGGAaugcaagacUCGACCCg -3' miRNA: 3'- gACCUgUCCaCUa---GCUCCU---------AGUUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 85540 | 0.68 | 0.938783 |
Target: 5'- aUGGACucGGUGAUUGgaAGGGcCGugCCg -3' miRNA: 3'- gACCUGu-CCACUAGC--UCCUaGUugGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 98656 | 0.7 | 0.862438 |
Target: 5'- aCUGGAagAGGUGGcuaUCGGGGAgaugaGAUCCa -3' miRNA: 3'- -GACCUg-UCCACU---AGCUCCUag---UUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 67555 | 0.68 | 0.938783 |
Target: 5'- uUGGgaACAcGGUGAUCGAGu-UCAagacACCCa -3' miRNA: 3'- gACC--UGU-CCACUAGCUCcuAGU----UGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 93318 | 0.66 | 0.97487 |
Target: 5'- aUGGuuCGGGUGAccgCGcGGAccggugcgcucguaUCGACCCg -3' miRNA: 3'- gACCu-GUCCACUa--GCuCCU--------------AGUUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 60133 | 0.66 | 0.975394 |
Target: 5'- -cGGACAGGUGGacucaucgaaauuUCGGGuucggagaGGUCAGUCCa -3' miRNA: 3'- gaCCUGUCCACU-------------AGCUC--------CUAGUUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 132123 | 0.71 | 0.829631 |
Target: 5'- gUGGACggucucAGGUGAaucccgaGAGGGUCgAACCCu -3' miRNA: 3'- gACCUG------UCCACUag-----CUCCUAG-UUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 87925 | 0.66 | 0.978134 |
Target: 5'- -gGGGCAGGUccaguuuAUCGAGG-UCAugGCUCa -3' miRNA: 3'- gaCCUGUCCAc------UAGCUCCuAGU--UGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 54181 | 0.66 | 0.98253 |
Target: 5'- aCUGGcgaAGGUGAagCGAGGGgccgCgAACCUg -3' miRNA: 3'- -GACCug-UCCACUa-GCUCCUa---G-UUGGG- -5' |
|||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 130991 | 0.66 | 0.978134 |
Target: 5'- -cGGACGGG-GAguucugcuUCGGGGA-CGGCgCCu -3' miRNA: 3'- gaCCUGUCCaCU--------AGCUCCUaGUUG-GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home