miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2888 5' -52.4 NC_001493.1 + 129986 1.12 0.00406
Target:  5'- cCUGGACAGGUGAUCGAGGAUCAACCCc -3'
miRNA:   3'- -GACCUGUCCACUAGCUCCUAGUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 14432 1.12 0.00406
Target:  5'- cCUGGACAGGUGAUCGAGGAUCAACCCc -3'
miRNA:   3'- -GACCUGUCCACUAGCUCCUAGUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 101198 0.74 0.684545
Target:  5'- gUGGAC-GGUGAaCG-GGAUCuACCCa -3'
miRNA:   3'- gACCUGuCCACUaGCuCCUAGuUGGG- -5'
2888 5' -52.4 NC_001493.1 + 36865 0.73 0.725602
Target:  5'- -cGGACcGGagagGGUCGGGGGUUAuuACCCa -3'
miRNA:   3'- gaCCUGuCCa---CUAGCUCCUAGU--UGGG- -5'
2888 5' -52.4 NC_001493.1 + 26647 0.73 0.745663
Target:  5'- aCUGGugcucgacgaGCAGGUGGUCGAcGAUU-ACCCu -3'
miRNA:   3'- -GACC----------UGUCCACUAGCUcCUAGuUGGG- -5'
2888 5' -52.4 NC_001493.1 + 37548 0.72 0.784449
Target:  5'- aUGGAgGGGUcGUCGAccGGGUC-GCCCg -3'
miRNA:   3'- gACCUgUCCAcUAGCU--CCUAGuUGGG- -5'
2888 5' -52.4 NC_001493.1 + 30827 0.72 0.803019
Target:  5'- -cGGGCcGGUGGUCGGGGGg-AGCaCCa -3'
miRNA:   3'- gaCCUGuCCACUAGCUCCUagUUG-GG- -5'
2888 5' -52.4 NC_001493.1 + 16569 0.71 0.829631
Target:  5'- gUGGACggucucAGGUGAaucccgaGAGGGUCgAACCCu -3'
miRNA:   3'- gACCUG------UCCACUag-----CUCCUAG-UUGGG- -5'
2888 5' -52.4 NC_001493.1 + 132123 0.71 0.829631
Target:  5'- gUGGACggucucAGGUGAaucccgaGAGGGUCgAACCCu -3'
miRNA:   3'- gACCUG------UCCACUag-----CUCCUAG-UUGGG- -5'
2888 5' -52.4 NC_001493.1 + 98656 0.7 0.862438
Target:  5'- aCUGGAagAGGUGGcuaUCGGGGAgaugaGAUCCa -3'
miRNA:   3'- -GACCUg-UCCACU---AGCUCCUag---UUGGG- -5'
2888 5' -52.4 NC_001493.1 + 47979 0.7 0.87756
Target:  5'- -gGGAUGGGUG-UCGAcu-UCAACCCg -3'
miRNA:   3'- gaCCUGUCCACuAGCUccuAGUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 88480 0.69 0.897176
Target:  5'- -cGGACgGGGUGAUCGGgcccacguacgguGGGUugacacaCGACCCg -3'
miRNA:   3'- gaCCUG-UCCACUAGCU-------------CCUA-------GUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 26799 0.69 0.898506
Target:  5'- -cGGACGGGagcgGGUcCGAGGAgagugaagauUCGGCCUc -3'
miRNA:   3'- gaCCUGUCCa---CUA-GCUCCU----------AGUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 22099 0.69 0.898506
Target:  5'- -cGGACAGGgucgcGAUCG-GGA-CGuACCCg -3'
miRNA:   3'- gaCCUGUCCa----CUAGCuCCUaGU-UGGG- -5'
2888 5' -52.4 NC_001493.1 + 102384 0.69 0.905007
Target:  5'- gUGGACAGGgcccgcgccGGUCGAaGGAaCcGCCCc -3'
miRNA:   3'- gACCUGUCCa--------CUAGCU-CCUaGuUGGG- -5'
2888 5' -52.4 NC_001493.1 + 23279 0.69 0.922458
Target:  5'- gCUGGAgAGGUuguuGGUgGAGGGUCAcguaucgACCg -3'
miRNA:   3'- -GACCUgUCCA----CUAgCUCCUAGU-------UGGg -5'
2888 5' -52.4 NC_001493.1 + 66525 0.69 0.923023
Target:  5'- -gGGAC-GGUGggCGAGGGUgggcagaaCGACCUc -3'
miRNA:   3'- gaCCUGuCCACuaGCUCCUA--------GUUGGG- -5'
2888 5' -52.4 NC_001493.1 + 25596 0.68 0.93378
Target:  5'- -gGGACAGGaGGUUcgGGGGGUCcACCg -3'
miRNA:   3'- gaCCUGUCCaCUAG--CUCCUAGuUGGg -5'
2888 5' -52.4 NC_001493.1 + 67555 0.68 0.938783
Target:  5'- uUGGgaACAcGGUGAUCGAGu-UCAagacACCCa -3'
miRNA:   3'- gACC--UGU-CCACUAGCUCcuAGU----UGGG- -5'
2888 5' -52.4 NC_001493.1 + 85540 0.68 0.938783
Target:  5'- aUGGACucGGUGAUUGgaAGGGcCGugCCg -3'
miRNA:   3'- gACCUGu-CCACUAGC--UCCUaGUugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.