Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 29746 | 0.66 | 0.970083 |
Target: 5'- -aGGuccauCAcGGUGGUccCGAGGGUCGucucGCCCu -3' miRNA: 3'- gaCCu----GU-CCACUA--GCUCCUAGU----UGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 85540 | 0.68 | 0.938783 |
Target: 5'- aUGGACucGGUGAUUGgaAGGGcCGugCCg -3' miRNA: 3'- gACCUGu-CCACUAGC--UCCUaGUugGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 113436 | 0.68 | 0.943536 |
Target: 5'- gUGGAaAGGgGGguugCGAGGAaugcaagacUCGACCCg -3' miRNA: 3'- gACCUgUCCaCUa---GCUCCU---------AGUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 113307 | 0.68 | 0.948042 |
Target: 5'- -aGGuccACAGGgagGAcaCGGGGAUCGugCCg -3' miRNA: 3'- gaCC---UGUCCa--CUa-GCUCCUAGUugGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 37941 | 0.68 | 0.948042 |
Target: 5'- -aGGGCGGG-GAUCGGGauguGGUgAACCUu -3' miRNA: 3'- gaCCUGUCCaCUAGCUC----CUAgUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 102784 | 0.68 | 0.948042 |
Target: 5'- aUGGACAaguGGUGuUCGAGc--CGGCCCu -3' miRNA: 3'- gACCUGU---CCACuAGCUCcuaGUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 97072 | 0.67 | 0.952303 |
Target: 5'- -cGGACAGGcuccaccUCG-GGGUCuGCCCg -3' miRNA: 3'- gaCCUGUCCacu----AGCuCCUAGuUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 81285 | 0.67 | 0.955931 |
Target: 5'- -cGGGgAGuaucucGUGAUUGAGGAUCGAgaucuucCCCg -3' miRNA: 3'- gaCCUgUC------CACUAGCUCCUAGUU-------GGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 32743 | 0.67 | 0.956323 |
Target: 5'- cCUGGACAcauacGUGcgCGGGGGggucgUGACCCc -3' miRNA: 3'- -GACCUGUc----CACuaGCUCCUa----GUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 67555 | 0.68 | 0.938783 |
Target: 5'- uUGGgaACAcGGUGAUCGAGu-UCAagacACCCa -3' miRNA: 3'- gACC--UGU-CCACUAGCUCcuAGU----UGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 102384 | 0.69 | 0.905007 |
Target: 5'- gUGGACAGGgcccgcgccGGUCGAaGGAaCcGCCCc -3' miRNA: 3'- gACCUGUCCa--------CUAGCU-CCUaGuUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 26799 | 0.69 | 0.898506 |
Target: 5'- -cGGACGGGagcgGGUcCGAGGAgagugaagauUCGGCCUc -3' miRNA: 3'- gaCCUGUCCa---CUA-GCUCCU----------AGUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 26647 | 0.73 | 0.745663 |
Target: 5'- aCUGGugcucgacgaGCAGGUGGUCGAcGAUU-ACCCu -3' miRNA: 3'- -GACC----------UGUCCACUAGCUcCUAGuUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 37548 | 0.72 | 0.784449 |
Target: 5'- aUGGAgGGGUcGUCGAccGGGUC-GCCCg -3' miRNA: 3'- gACCUgUCCAcUAGCU--CCUAGuUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 30827 | 0.72 | 0.803019 |
Target: 5'- -cGGGCcGGUGGUCGGGGGg-AGCaCCa -3' miRNA: 3'- gaCCUGuCCACUAGCUCCUagUUG-GG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 16569 | 0.71 | 0.829631 |
Target: 5'- gUGGACggucucAGGUGAaucccgaGAGGGUCgAACCCu -3' miRNA: 3'- gACCUG------UCCACUag-----CUCCUAG-UUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 132123 | 0.71 | 0.829631 |
Target: 5'- gUGGACggucucAGGUGAaucccgaGAGGGUCgAACCCu -3' miRNA: 3'- gACCUG------UCCACUag-----CUCCUAG-UUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 98656 | 0.7 | 0.862438 |
Target: 5'- aCUGGAagAGGUGGcuaUCGGGGAgaugaGAUCCa -3' miRNA: 3'- -GACCUg-UCCACU---AGCUCCUag---UUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 47979 | 0.7 | 0.87756 |
Target: 5'- -gGGAUGGGUG-UCGAcu-UCAACCCg -3' miRNA: 3'- gaCCUGUCCACuAGCUccuAGUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 88480 | 0.69 | 0.897176 |
Target: 5'- -cGGACgGGGUGAUCGGgcccacguacgguGGGUugacacaCGACCCg -3' miRNA: 3'- gaCCUG-UCCACUAGCU-------------CCUA-------GUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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