Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2888 | 5' | -52.4 | NC_001493.1 | + | 111823 | 0.67 | 0.96698 |
Target: 5'- -gGGGCuGGUGcUCGcGGGUacGCCCg -3' miRNA: 3'- gaCCUGuCCACuAGCuCCUAguUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 109158 | 0.67 | 0.966333 |
Target: 5'- cCUGGACAGccgccgcaCGGGGAgagauggCGACCCg -3' miRNA: 3'- -GACCUGUCcacua---GCUCCUa------GUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 82418 | 0.67 | 0.963656 |
Target: 5'- aUGGACagaacGGGuUGAacgcgacaauaUCGGGGGUggcCAGCCCg -3' miRNA: 3'- gACCUG-----UCC-ACU-----------AGCUCCUA---GUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 106153 | 0.67 | 0.960471 |
Target: 5'- -gGGGCAGGUGcccAUgGAGGugacgggugacuucCGACCCg -3' miRNA: 3'- gaCCUGUCCAC---UAgCUCCua------------GUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 30466 | 0.67 | 0.957864 |
Target: 5'- -cGGACGGGgcGAUCGugucgcGGGAUCAGaugaucaggugagguCCCu -3' miRNA: 3'- gaCCUGUCCa-CUAGC------UCCUAGUU---------------GGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 32743 | 0.67 | 0.956323 |
Target: 5'- cCUGGACAcauacGUGcgCGGGGGggucgUGACCCc -3' miRNA: 3'- -GACCUGUc----CACuaGCUCCUa----GUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 81285 | 0.67 | 0.955931 |
Target: 5'- -cGGGgAGuaucucGUGAUUGAGGAUCGAgaucuucCCCg -3' miRNA: 3'- gaCCUgUC------CACUAGCUCCUAGUU-------GGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 97072 | 0.67 | 0.952303 |
Target: 5'- -cGGACAGGcuccaccUCG-GGGUCuGCCCg -3' miRNA: 3'- gaCCUGUCCacu----AGCuCCUAGuUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 118905 | 0.67 | 0.952303 |
Target: 5'- -cGGGguGGUGAUCGAcGAUguacACCCu -3' miRNA: 3'- gaCCUguCCACUAGCUcCUAgu--UGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 3351 | 0.67 | 0.952303 |
Target: 5'- -cGGGguGGUGAUCGAcGAUguacACCCu -3' miRNA: 3'- gaCCUguCCACUAGCUcCUAgu--UGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 102784 | 0.68 | 0.948042 |
Target: 5'- aUGGACAaguGGUGuUCGAGc--CGGCCCu -3' miRNA: 3'- gACCUGU---CCACuAGCUCcuaGUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 113307 | 0.68 | 0.948042 |
Target: 5'- -aGGuccACAGGgagGAcaCGGGGAUCGugCCg -3' miRNA: 3'- gaCC---UGUCCa--CUa-GCUCCUAGUugGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 19087 | 0.68 | 0.948042 |
Target: 5'- -cGcGCGGGUGccUGAGGAcCAACCCc -3' miRNA: 3'- gaCcUGUCCACuaGCUCCUaGUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 37941 | 0.68 | 0.948042 |
Target: 5'- -aGGGCGGG-GAUCGGGauguGGUgAACCUu -3' miRNA: 3'- gaCCUGUCCaCUAGCUC----CUAgUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 113436 | 0.68 | 0.943536 |
Target: 5'- gUGGAaAGGgGGguugCGAGGAaugcaagacUCGACCCg -3' miRNA: 3'- gACCUgUCCaCUa---GCUCCU---------AGUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 80401 | 0.68 | 0.943536 |
Target: 5'- -gGGACA-GUGGUCGccgcacgccuucGGGAUCucuCCCa -3' miRNA: 3'- gaCCUGUcCACUAGC------------UCCUAGuu-GGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 71944 | 0.68 | 0.938783 |
Target: 5'- -gGGACAGGUGAagGccaucuugaacGGGAagGGCCUg -3' miRNA: 3'- gaCCUGUCCACUagC-----------UCCUagUUGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 67555 | 0.68 | 0.938783 |
Target: 5'- uUGGgaACAcGGUGAUCGAGu-UCAagacACCCa -3' miRNA: 3'- gACC--UGU-CCACUAGCUCcuAGU----UGGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 85540 | 0.68 | 0.938783 |
Target: 5'- aUGGACucGGUGAUUGgaAGGGcCGugCCg -3' miRNA: 3'- gACCUGu-CCACUAGC--UCCUaGUugGG- -5' |
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2888 | 5' | -52.4 | NC_001493.1 | + | 25596 | 0.68 | 0.93378 |
Target: 5'- -gGGACAGGaGGUUcgGGGGGUCcACCg -3' miRNA: 3'- gaCCUGUCCaCUAG--CUCCUAGuUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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