miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 3' -59.6 NC_006146.1 + 4168 0.69 0.566035
Target:  5'- cGGCUCGGCcuCCUGCCCCGagacgggcucggcgGGAACCg- -3'
miRNA:   3'- -CUGGGUCG--GGACGGGGCa-------------CUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 63115 0.69 0.562071
Target:  5'- aGACCCuGCgCaggUGCCCC-UGGGACCUGc -3'
miRNA:   3'- -CUGGGuCGgG---ACGGGGcACUUUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 117881 0.69 0.552195
Target:  5'- cGGCCgCGGCCa-GCCgCGUGAGGCCc- -3'
miRNA:   3'- -CUGG-GUCGGgaCGGgGCACUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 16014 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 22170 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 19092 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 25248 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 28326 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 12937 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 3398 0.69 0.538459
Target:  5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3'
miRNA:   3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5'
28883 3' -59.6 NC_006146.1 + 2466 0.69 0.538459
Target:  5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3'
miRNA:   3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5'
28883 3' -59.6 NC_006146.1 + 1534 0.69 0.538459
Target:  5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3'
miRNA:   3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5'
28883 3' -59.6 NC_006146.1 + 603 0.69 0.538459
Target:  5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3'
miRNA:   3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5'
28883 3' -59.6 NC_006146.1 + 35726 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35633 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35540 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35354 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35447 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33775 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33496 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.