Results 41 - 60 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 28580 | 0.68 | 0.622099 |
Target: 5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3' miRNA: 3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 151924 | 0.68 | 0.622099 |
Target: 5'- uGGCuCCGGCCCUGCCgCCcucucuaGggGCCg- -3' miRNA: 3'- -CUG-GGUCGGGACGG-GGca-----CuuUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 16268 | 0.68 | 0.622099 |
Target: 5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3' miRNA: 3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 13190 | 0.68 | 0.622099 |
Target: 5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3' miRNA: 3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 28844 | 0.68 | 0.601986 |
Target: 5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3' miRNA: 3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 43204 | 0.68 | 0.601986 |
Target: 5'- cGGCCCAGUCCUGCUacgaggaguaCGUGcagcGGACCUu -3' miRNA: 3'- -CUGGGUCGGGACGGg---------GCAC----UUUGGAu -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 13454 | 0.68 | 0.601986 |
Target: 5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3' miRNA: 3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 16532 | 0.68 | 0.601986 |
Target: 5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3' miRNA: 3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 19610 | 0.68 | 0.601986 |
Target: 5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3' miRNA: 3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 22688 | 0.68 | 0.601986 |
Target: 5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3' miRNA: 3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 25766 | 0.68 | 0.601986 |
Target: 5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3' miRNA: 3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 124502 | 0.68 | 0.601986 |
Target: 5'- gGACUCGGCCUggucucgGCCCUGgcgagggacgGggGCCUGg -3' miRNA: 3'- -CUGGGUCGGGa------CGGGGCa---------CuuUGGAU- -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 59022 | 0.69 | 0.591958 |
Target: 5'- --aCCAGCaCUGCCCCGaGGGACCc- -3' miRNA: 3'- cugGGUCGgGACGGGGCaCUUUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 118924 | 0.69 | 0.591958 |
Target: 5'- cGCCCGGCCC-GCaugCCG-GAGACCUc -3' miRNA: 3'- cUGGGUCGGGaCGg--GGCaCUUUGGAu -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 127312 | 0.69 | 0.581958 |
Target: 5'- cGACCCGGCCUcccGCCCCGcuccccgGGAACgCUc -3' miRNA: 3'- -CUGGGUCGGGa--CGGGGCa------CUUUG-GAu -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 18012 | 0.69 | 0.571994 |
Target: 5'- cGCCCAucGCCUUGCCCUGcgcccGggGCCa- -3' miRNA: 3'- cUGGGU--CGGGACGGGGCa----CuuUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 21090 | 0.69 | 0.571994 |
Target: 5'- cGCCCAucGCCUUGCCCUGcgcccGggGCCa- -3' miRNA: 3'- cUGGGU--CGGGACGGGGCa----CuuUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 24168 | 0.69 | 0.571994 |
Target: 5'- cGCCCAucGCCUUGCCCUGcgcccGggGCCa- -3' miRNA: 3'- cUGGGU--CGGGACGGGGCa----CuuUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 14935 | 0.69 | 0.571994 |
Target: 5'- cGCCCAucGCCUUGCCCUGcgcccGggGCCa- -3' miRNA: 3'- cUGGGU--CGGGACGGGGCa----CuuUGGau -5' |
|||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 27246 | 0.69 | 0.571994 |
Target: 5'- cGCCCAucGCCUUGCCCUGcgcccGggGCCa- -3' miRNA: 3'- cUGGGU--CGGGACGGGGCa----CuuUGGau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home