miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 3' -59.6 NC_006146.1 + 101944 0.66 0.721855
Target:  5'- cGGCUCuGCCCUGCCCCcuggcuaGggGCUc- -3'
miRNA:   3'- -CUGGGuCGGGACGGGGca-----CuuUGGau -5'
28883 3' -59.6 NC_006146.1 + 74744 0.66 0.721855
Target:  5'- gGACCCAGUgagCCaGCCuCCGgGggGCCa- -3'
miRNA:   3'- -CUGGGUCG---GGaCGG-GGCaCuuUGGau -5'
28883 3' -59.6 NC_006146.1 + 150952 0.67 0.702227
Target:  5'- -cCCCGGCCCugaucuUGCCCaggGAGGCCg- -3'
miRNA:   3'- cuGGGUCGGG------ACGGGgcaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 17598 0.67 0.692323
Target:  5'- cGACCUGGCCCggGCCUgGU---GCCUGg -3'
miRNA:   3'- -CUGGGUCGGGa-CGGGgCAcuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 150898 0.67 0.682371
Target:  5'- uGGCCCggaggaAGCCCUucccgGCgUCGUGggGCCUc -3'
miRNA:   3'- -CUGGG------UCGGGA-----CGgGGCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 150706 0.67 0.682371
Target:  5'- uGCCCAGCcuCCUGCgccCCCG-GggGCCc- -3'
miRNA:   3'- cUGGGUCG--GGACG---GGGCaCuuUGGau -5'
28883 3' -59.6 NC_006146.1 + 16012 0.67 0.682371
Target:  5'- aGCCCgggcgaGGCCCUGCCCCccGAcgggcucuACCUGa -3'
miRNA:   3'- cUGGG------UCGGGACGGGGcaCUu-------UGGAU- -5'
28883 3' -59.6 NC_006146.1 + 46974 0.67 0.672378
Target:  5'- cGGCCCGGCCgccgccaggaaUUGCgCCCGUcGGACCg- -3'
miRNA:   3'- -CUGGGUCGG-----------GACG-GGGCAcUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 8221 0.67 0.672378
Target:  5'- uACCCAuGCCCcuacucauCCCCGUGAAgcaucuGCCUAc -3'
miRNA:   3'- cUGGGU-CGGGac------GGGGCACUU------UGGAU- -5'
28883 3' -59.6 NC_006146.1 + 146714 0.67 0.672378
Target:  5'- aGGCCCAGCCCuccucUGCCCUGU----CCa- -3'
miRNA:   3'- -CUGGGUCGGG-----ACGGGGCAcuuuGGau -5'
28883 3' -59.6 NC_006146.1 + 158049 0.67 0.672378
Target:  5'- cACCCAGCCUcGCCCCa-GgcGCCUc -3'
miRNA:   3'- cUGGGUCGGGaCGGGGcaCuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 35042 0.67 0.672378
Target:  5'- uGACCUGucacucGCCUUGUCCCGUGGAcUCUGu -3'
miRNA:   3'- -CUGGGU------CGGGACGGGGCACUUuGGAU- -5'
28883 3' -59.6 NC_006146.1 + 45285 0.67 0.671376
Target:  5'- --aCCAGCCCaUGCCCCacccucgGUGGAaaGCCg- -3'
miRNA:   3'- cugGGUCGGG-ACGGGG-------CACUU--UGGau -5'
28883 3' -59.6 NC_006146.1 + 169072 0.67 0.662353
Target:  5'- cACCCGGCUgUGCCCCGccauGAUCUc -3'
miRNA:   3'- cUGGGUCGGgACGGGGCacu-UUGGAu -5'
28883 3' -59.6 NC_006146.1 + 67331 0.68 0.652305
Target:  5'- aGCCCGGCCCagGCCCgGgcGAGCCc- -3'
miRNA:   3'- cUGGGUCGGGa-CGGGgCacUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 117931 0.68 0.63217
Target:  5'- cGCCC-GCCCcGCCCCGcGGAggGCCa- -3'
miRNA:   3'- cUGGGuCGGGaCGGGGCaCUU--UGGau -5'
28883 3' -59.6 NC_006146.1 + 3154 0.68 0.63217
Target:  5'- cACCCGGCCCcugcGCCCUGaucGAGcACCUGc -3'
miRNA:   3'- cUGGGUCGGGa---CGGGGCa--CUU-UGGAU- -5'
28883 3' -59.6 NC_006146.1 + 16268 0.68 0.622099
Target:  5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3'
miRNA:   3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 25502 0.68 0.622099
Target:  5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3'
miRNA:   3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 13190 0.68 0.622099
Target:  5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3'
miRNA:   3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.