miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 3' -59.6 NC_006146.1 + 2582 0.7 0.484838
Target:  5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3'
miRNA:   3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 1650 0.7 0.484838
Target:  5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3'
miRNA:   3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 109479 0.7 0.484838
Target:  5'- aGCCCGGCCgUGCCCgCGUu-GGCCa- -3'
miRNA:   3'- cUGGGUCGGgACGGG-GCAcuUUGGau -5'
28883 3' -59.6 NC_006146.1 + 83116 0.7 0.503716
Target:  5'- uACCCAGCCCUGUgUC-UGGGACCc- -3'
miRNA:   3'- cUGGGUCGGGACGgGGcACUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 53366 0.7 0.503716
Target:  5'- aAUgCGGCCCagGCCCCGagggagaggcgUGAGACCUAu -3'
miRNA:   3'- cUGgGUCGGGa-CGGGGC-----------ACUUUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 97294 0.7 0.512315
Target:  5'- gGACCuCGGUCgaaaauaCUGCCCCGUGAgcucGACCg- -3'
miRNA:   3'- -CUGG-GUCGG-------GACGGGGCACU----UUGGau -5'
28883 3' -59.6 NC_006146.1 + 4938 0.7 0.522906
Target:  5'- uGGCCguGCUCugUGCCCCG-GGGACCa- -3'
miRNA:   3'- -CUGGguCGGG--ACGGGGCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35354 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34239 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33960 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35447 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33403 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33682 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33775 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34053 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 33496 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35726 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35633 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 35540 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5'
28883 3' -59.6 NC_006146.1 + 34425 0.7 0.532607
Target:  5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3'
miRNA:   3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.