Results 21 - 40 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 1650 | 0.7 | 0.484838 |
Target: 5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3' miRNA: 3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 2582 | 0.7 | 0.484838 |
Target: 5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3' miRNA: 3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 3514 | 0.7 | 0.484838 |
Target: 5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3' miRNA: 3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 53366 | 0.7 | 0.503716 |
Target: 5'- aAUgCGGCCCagGCCCCGagggagaggcgUGAGACCUAu -3' miRNA: 3'- cUGgGUCGGGa-CGGGGC-----------ACUUUGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 83116 | 0.7 | 0.503716 |
Target: 5'- uACCCAGCCCUGUgUC-UGGGACCc- -3' miRNA: 3'- cUGGGUCGGGACGgGGcACUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 97294 | 0.7 | 0.512315 |
Target: 5'- gGACCuCGGUCgaaaauaCUGCCCCGUGAgcucGACCg- -3' miRNA: 3'- -CUGG-GUCGG-------GACGGGGCACU----UUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 4938 | 0.7 | 0.522906 |
Target: 5'- uGGCCguGCUCugUGCCCCG-GGGACCa- -3' miRNA: 3'- -CUGGguCGGG--ACGGGGCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 34425 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 34518 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 35354 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 35447 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 35540 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 35633 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 35726 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 33403 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 33496 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 33682 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 33775 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 33960 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 34053 | 0.7 | 0.532607 |
Target: 5'- cACCCGGCCCccgGCCCCGagcuccaGGACCg- -3' miRNA: 3'- cUGGGUCGGGa--CGGGGCac-----UUUGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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