Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 29544 | 1.06 | 0.001997 |
Target: 5'- uGACCCAGCCCUGCCCCGUGAAACCUAa -3' miRNA: 3'- -CUGGGUCGGGACGGGGCACUUUGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 139287 | 0.76 | 0.241317 |
Target: 5'- gGGCCCGGCCUUGagcccaucCCCCGUGGugucAGCCUGu -3' miRNA: 3'- -CUGGGUCGGGAC--------GGGGCACU----UUGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 111457 | 0.74 | 0.311495 |
Target: 5'- cGGCCCAGUCgUGCCa-GUGAAACCa- -3' miRNA: 3'- -CUGGGUCGGgACGGggCACUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 3924 | 0.73 | 0.333147 |
Target: 5'- cGCCCAGCCaCUGCCCCGU----CCUc -3' miRNA: 3'- cUGGGUCGG-GACGGGGCAcuuuGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 161820 | 0.73 | 0.362911 |
Target: 5'- aGACCCGGCUUUccuuuugggccacGCCCCGUGGgaGACCg- -3' miRNA: 3'- -CUGGGUCGGGA-------------CGGGGCACU--UUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 33005 | 0.73 | 0.363698 |
Target: 5'- -cCCCGGCCCUGUCCaCG-GGGACCc- -3' miRNA: 3'- cuGGGUCGGGACGGG-GCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 20434 | 0.72 | 0.387854 |
Target: 5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3' miRNA: 3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 29668 | 0.72 | 0.387854 |
Target: 5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3' miRNA: 3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 23512 | 0.72 | 0.387854 |
Target: 5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3' miRNA: 3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 14278 | 0.72 | 0.387854 |
Target: 5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3' miRNA: 3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 17356 | 0.72 | 0.387854 |
Target: 5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3' miRNA: 3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 26590 | 0.72 | 0.387854 |
Target: 5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3' miRNA: 3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 41867 | 0.72 | 0.396137 |
Target: 5'- gGGCCCAGCUcgggCUGCgCCGUGccccGGACCUGa -3' miRNA: 3'- -CUGGGUCGG----GACGgGGCAC----UUUGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 161887 | 0.72 | 0.421658 |
Target: 5'- aGACCCGGCuucCCUuuugggcaacGCCCCGUGGgaGACCg- -3' miRNA: 3'- -CUGGGUCG---GGA----------CGGGGCACU--UUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 161954 | 0.72 | 0.421658 |
Target: 5'- aGACCCGGCuucCCUuucgggcaacGCCCCGUGGgaGACCg- -3' miRNA: 3'- -CUGGGUCG---GGA----------CGGGGCACU--UUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 104639 | 0.71 | 0.448144 |
Target: 5'- gGACCCgcgAGaCCCUGCCCCccaccGUGGAgaauGCCUGc -3' miRNA: 3'- -CUGGG---UC-GGGACGGGG-----CACUU----UGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 119249 | 0.71 | 0.475526 |
Target: 5'- cGGCaCCGGCCCUgGCCCCcUGGgaguccagAGCCUGg -3' miRNA: 3'- -CUG-GGUCGGGA-CGGGGcACU--------UUGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 109479 | 0.7 | 0.484838 |
Target: 5'- aGCCCGGCCgUGCCCgCGUu-GGCCa- -3' miRNA: 3'- cUGGGUCGGgACGGG-GCAcuUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 719 | 0.7 | 0.484838 |
Target: 5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3' miRNA: 3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 1650 | 0.7 | 0.484838 |
Target: 5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3' miRNA: 3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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