miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 3' -59.6 NC_006146.1 + 139287 0.76 0.241317
Target:  5'- gGGCCCGGCCUUGagcccaucCCCCGUGGugucAGCCUGu -3'
miRNA:   3'- -CUGGGUCGGGAC--------GGGGCACU----UUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 22170 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 28326 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 60067 0.66 0.769464
Target:  5'- gGGCgCC-GCCUcGUCCCGUGGAGCUa- -3'
miRNA:   3'- -CUG-GGuCGGGaCGGGGCACUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 20434 0.72 0.387854
Target:  5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3'
miRNA:   3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5'
28883 3' -59.6 NC_006146.1 + 23512 0.72 0.387854
Target:  5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3'
miRNA:   3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5'
28883 3' -59.6 NC_006146.1 + 29668 0.72 0.387854
Target:  5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3'
miRNA:   3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5'
28883 3' -59.6 NC_006146.1 + 161887 0.72 0.421658
Target:  5'- aGACCCGGCuucCCUuuugggcaacGCCCCGUGGgaGACCg- -3'
miRNA:   3'- -CUGGGUCG---GGA----------CGGGGCACU--UUGGau -5'
28883 3' -59.6 NC_006146.1 + 83116 0.7 0.503716
Target:  5'- uACCCAGCCCUGUgUC-UGGGACCc- -3'
miRNA:   3'- cUGGGUCGGGACGgGGcACUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 19092 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 4938 0.7 0.522906
Target:  5'- uGGCCguGCUCugUGCCCCG-GGGACCa- -3'
miRNA:   3'- -CUGGguCGGG--ACGGGGCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 119249 0.71 0.475526
Target:  5'- cGGCaCCGGCCCUgGCCCCcUGGgaguccagAGCCUGg -3'
miRNA:   3'- -CUG-GGUCGGGA-CGGGGcACU--------UUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 161820 0.73 0.362911
Target:  5'- aGACCCGGCUUUccuuuugggccacGCCCCGUGGgaGACCg- -3'
miRNA:   3'- -CUGGGUCGGGA-------------CGGGGCACU--UUGGau -5'
28883 3' -59.6 NC_006146.1 + 12937 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 14278 0.72 0.387854
Target:  5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3'
miRNA:   3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5'
28883 3' -59.6 NC_006146.1 + 161954 0.72 0.421658
Target:  5'- aGACCCGGCuucCCUuucgggcaacGCCCCGUGGgaGACCg- -3'
miRNA:   3'- -CUGGGUCG---GGA----------CGGGGCACU--UUGGau -5'
28883 3' -59.6 NC_006146.1 + 16014 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 25248 0.69 0.552195
Target:  5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3'
miRNA:   3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 17356 0.72 0.387854
Target:  5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3'
miRNA:   3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5'
28883 3' -59.6 NC_006146.1 + 26590 0.72 0.387854
Target:  5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3'
miRNA:   3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.