miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 3' -59.6 NC_006146.1 + 59022 0.69 0.591958
Target:  5'- --aCCAGCaCUGCCCCGaGGGACCc- -3'
miRNA:   3'- cugGGUCGgGACGGGGCaCUUUGGau -5'
28883 3' -59.6 NC_006146.1 + 143052 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 17598 0.67 0.692323
Target:  5'- cGACCUGGCCCggGCCUgGU---GCCUGg -3'
miRNA:   3'- -CUGGGUCGGGa-CGGGgCAcuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 16012 0.67 0.682371
Target:  5'- aGCCCgggcgaGGCCCUGCCCCccGAcgggcucuACCUGa -3'
miRNA:   3'- cUGGG------UCGGGACGGGGcaCUu-------UGGAU- -5'
28883 3' -59.6 NC_006146.1 + 158049 0.67 0.672378
Target:  5'- cACCCAGCCUcGCCCCa-GgcGCCUc -3'
miRNA:   3'- cUGGGUCGGGaCGGGGcaCuuUGGAu -5'
28883 3' -59.6 NC_006146.1 + 169072 0.67 0.662353
Target:  5'- cACCCGGCUgUGCCCCGccauGAUCUc -3'
miRNA:   3'- cUGGGUCGGgACGGGGCacu-UUGGAu -5'
28883 3' -59.6 NC_006146.1 + 117931 0.68 0.63217
Target:  5'- cGCCC-GCCCcGCCCCGcGGAggGCCa- -3'
miRNA:   3'- cUGGGuCGGGaCGGGGCaCUU--UGGau -5'
28883 3' -59.6 NC_006146.1 + 124502 0.68 0.601986
Target:  5'- gGACUCGGCCUggucucgGCCCUGgcgagggacgGggGCCUGg -3'
miRNA:   3'- -CUGGGUCGGGa------CGGGGCa---------CuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 118924 0.69 0.591958
Target:  5'- cGCCCGGCCC-GCaugCCG-GAGACCUc -3'
miRNA:   3'- cUGGGUCGGGaCGg--GGCaCUUUGGAu -5'
28883 3' -59.6 NC_006146.1 + 146130 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 149208 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 152286 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 68033 0.66 0.754499
Target:  5'- gGGCCCGGCCacgaccagguggcggCUGCCCUG-GcuGCCa- -3'
miRNA:   3'- -CUGGGUCGG---------------GACGGGGCaCuuUGGau -5'
28883 3' -59.6 NC_006146.1 + 72574 0.66 0.741184
Target:  5'- cGGgCCGcGCCCgGCCCCGUGccagacGGCCa- -3'
miRNA:   3'- -CUgGGU-CGGGaCGGGGCACu-----UUGGau -5'
28883 3' -59.6 NC_006146.1 + 66697 0.66 0.741184
Target:  5'- aACCCucGGCUUgcgGCCCCGUGggGgCg- -3'
miRNA:   3'- cUGGG--UCGGGa--CGGGGCACuuUgGau -5'
28883 3' -59.6 NC_006146.1 + 101656 0.66 0.741184
Target:  5'- gGACCCGGaCCUgGCCCUGggggGAAACg-- -3'
miRNA:   3'- -CUGGGUC-GGGaCGGGGCa---CUUUGgau -5'
28883 3' -59.6 NC_006146.1 + 71349 0.66 0.741184
Target:  5'- gGACCCcgauCUCUGCCCCG-GggGCUc- -3'
miRNA:   3'- -CUGGGuc--GGGACGGGGCaCuuUGGau -5'
28883 3' -59.6 NC_006146.1 + 161002 0.66 0.731561
Target:  5'- uGACCuCAGCCCcaUGCCgUGUGcaugcguACCUGa -3'
miRNA:   3'- -CUGG-GUCGGG--ACGGgGCACuu-----UGGAU- -5'
28883 3' -59.6 NC_006146.1 + 158443 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5'
28883 3' -59.6 NC_006146.1 + 155364 0.66 0.731561
Target:  5'- gGGCCCgagGGCCUgaaagGCCCCGgc--GCCUGg -3'
miRNA:   3'- -CUGGG---UCGGGa----CGGGGCacuuUGGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.