Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 3' | -59.6 | NC_006146.1 | + | 603 | 0.69 | 0.538459 |
Target: 5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3' miRNA: 3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 719 | 0.7 | 0.484838 |
Target: 5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3' miRNA: 3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 1534 | 0.69 | 0.538459 |
Target: 5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3' miRNA: 3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 1650 | 0.7 | 0.484838 |
Target: 5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3' miRNA: 3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 2466 | 0.69 | 0.538459 |
Target: 5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3' miRNA: 3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 2582 | 0.7 | 0.484838 |
Target: 5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3' miRNA: 3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 3154 | 0.68 | 0.63217 |
Target: 5'- cACCCGGCCCcugcGCCCUGaucGAGcACCUGc -3' miRNA: 3'- cUGGGUCGGGa---CGGGGCa--CUU-UGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 3398 | 0.69 | 0.538459 |
Target: 5'- cGGCgCCAGCCCUGCCCCcucucccccGCCa- -3' miRNA: 3'- -CUG-GGUCGGGACGGGGcacuu----UGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 3514 | 0.7 | 0.484838 |
Target: 5'- -cCCCGGCCCcGCCCuCG-GGAGCCc- -3' miRNA: 3'- cuGGGUCGGGaCGGG-GCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 3924 | 0.73 | 0.333147 |
Target: 5'- cGCCCAGCCaCUGCCCCGU----CCUc -3' miRNA: 3'- cUGGGUCGG-GACGGGGCAcuuuGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 4168 | 0.69 | 0.566035 |
Target: 5'- cGGCUCGGCcuCCUGCCCCGagacgggcucggcgGGAACCg- -3' miRNA: 3'- -CUGGGUCG--GGACGGGGCa-------------CUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 4938 | 0.7 | 0.522906 |
Target: 5'- uGGCCguGCUCugUGCCCCG-GGGACCa- -3' miRNA: 3'- -CUGGguCGGG--ACGGGGCaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 8221 | 0.67 | 0.672378 |
Target: 5'- uACCCAuGCCCcuacucauCCCCGUGAAgcaucuGCCUAc -3' miRNA: 3'- cUGGGU-CGGGac------GGGGCACUU------UGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 12937 | 0.69 | 0.552195 |
Target: 5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3' miRNA: 3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 13190 | 0.68 | 0.622099 |
Target: 5'- uGCCCGGCCUcGCUCCG-GgcGCCUc -3' miRNA: 3'- cUGGGUCGGGaCGGGGCaCuuUGGAu -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 13454 | 0.68 | 0.601986 |
Target: 5'- gGACCCcggcAGCCCgggugGCCCCa-GAGGCCa- -3' miRNA: 3'- -CUGGG----UCGGGa----CGGGGcaCUUUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 14278 | 0.72 | 0.387854 |
Target: 5'- aGGCCCAGUCCacucaGCCCCGUGu--CCa- -3' miRNA: 3'- -CUGGGUCGGGa----CGGGGCACuuuGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 14935 | 0.69 | 0.571994 |
Target: 5'- cGCCCAucGCCUUGCCCUGcgcccGggGCCa- -3' miRNA: 3'- cUGGGU--CGGGACGGGGCa----CuuUGGau -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 16012 | 0.67 | 0.682371 |
Target: 5'- aGCCCgggcgaGGCCCUGCCCCccGAcgggcucuACCUGa -3' miRNA: 3'- cUGGG------UCGGGACGGGGcaCUu-------UGGAU- -5' |
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28883 | 3' | -59.6 | NC_006146.1 | + | 16014 | 0.69 | 0.552195 |
Target: 5'- aGGCCCuGGCCCcGCCCgGUG--GCCUu -3' miRNA: 3'- -CUGGG-UCGGGaCGGGgCACuuUGGAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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