miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 151425 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 33195 0.67 0.541772
Target:  5'- -cCGGGcacCCCCGGGGGga-GGCCGGa -3'
miRNA:   3'- cuGUCCu--GGGGCCCCCgagUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 170169 0.67 0.541772
Target:  5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3'
miRNA:   3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 169238 0.67 0.541772
Target:  5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3'
miRNA:   3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 168306 0.67 0.541772
Target:  5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3'
miRNA:   3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 167374 0.67 0.541772
Target:  5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3'
miRNA:   3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 46041 0.67 0.532412
Target:  5'- cGACGGGGCCCUccaGGGGacgCAGCgAGu -3'
miRNA:   3'- -CUGUCCUGGGGc--CCCCga-GUCGgUCc -5'
28883 5' -63.5 NC_006146.1 + 16932 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 23087 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 26165 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 20009 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 155573 0.67 0.52311
Target:  5'- cGCGGGGCgCCCGccaGGGGCaCA-CCGGGg -3'
miRNA:   3'- cUGUCCUG-GGGC---CCCCGaGUcGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 29243 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 52706 0.67 0.52311
Target:  5'- gGGCGGGAggUCaGGGGGCggcCGGCCAGa -3'
miRNA:   3'- -CUGUCCUggGG-CCCCCGa--GUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 13854 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 34077 0.67 0.522183
Target:  5'- cACGGGGCCgggggucCCGGGGGg-CAGCCGc- -3'
miRNA:   3'- cUGUCCUGG-------GGCCCCCgaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 135610 0.68 0.513871
Target:  5'- aGACAGGcaACCCC-GGGGCUgA-UCAGGu -3'
miRNA:   3'- -CUGUCC--UGGGGcCCCCGAgUcGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 137208 0.68 0.513871
Target:  5'- -cCGGGcacACCCCGGGGaggaAGCCGGGu -3'
miRNA:   3'- cuGUCC---UGGGGCCCCcgagUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 60139 0.68 0.513871
Target:  5'- --aGGGACCUggugGGGGGUgUguGCCAGGg -3'
miRNA:   3'- cugUCCUGGGg---CCCCCG-AguCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 116252 0.68 0.513871
Target:  5'- cGACGGGGCCCCuccaaugcccGGGGaGCcacCGGaCCAGa -3'
miRNA:   3'- -CUGUCCUGGGG----------CCCC-CGa--GUC-GGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.