miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 22653 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 148078 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 62944 0.67 0.56065
Target:  5'- -cCAGGGCCCUGGaGGuCUCGGCUg-- -3'
miRNA:   3'- cuGUCCUGGGGCCcCC-GAGUCGGucc -5'
28883 5' -63.5 NC_006146.1 + 157312 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 145000 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 169063 0.67 0.56065
Target:  5'- -cCGGGGuCCCgGGGGGCggcgcgCGGCCu-- -3'
miRNA:   3'- cuGUCCU-GGGgCCCCCGa-----GUCGGucc -5'
28883 5' -63.5 NC_006146.1 + 141922 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 94943 0.67 0.56065
Target:  5'- gGACGuGGCCgCUgcgguagagGGGGGUgugCAGCCAGGc -3'
miRNA:   3'- -CUGUcCUGG-GG---------CCCCCGa--GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 167199 0.67 0.56065
Target:  5'- -cCGGGGuCCCgGGGGGCggcgcgCGGCCu-- -3'
miRNA:   3'- cuGUCCU-GGGgCCCCCGa-----GUCGGucc -5'
28883 5' -63.5 NC_006146.1 + 169995 0.67 0.56065
Target:  5'- -cCGGGGuCCCgGGGGGCggcgcgCGGCCu-- -3'
miRNA:   3'- cuGUCCU-GGGgCCCCCGa-----GUCGGucc -5'
28883 5' -63.5 NC_006146.1 + 154234 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 168131 0.67 0.56065
Target:  5'- -cCGGGGuCCCgGGGGGCggcgcgCGGCCu-- -3'
miRNA:   3'- cuGUCCU-GGGgCCCCCGa-----GUCGGucc -5'
28883 5' -63.5 NC_006146.1 + 151156 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 24187 0.67 0.551187
Target:  5'- gGACAGGGCagaGGaGGGCUgGGCCugcgAGGu -3'
miRNA:   3'- -CUGUCCUGgggCC-CCCGAgUCGG----UCC- -5'
28883 5' -63.5 NC_006146.1 + 142191 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 151425 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 154503 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 148347 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 157581 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 145269 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.