Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 1511 | 0.66 | 0.608524 |
Target: 5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3' miRNA: 3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 54232 | 0.66 | 0.60756 |
Target: 5'- gGGCGGGAgcagagcCUCUGGGcGGCccCGGUCAGGc -3' miRNA: 3'- -CUGUCCU-------GGGGCCC-CCGa-GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 96813 | 0.66 | 0.598894 |
Target: 5'- uGCAGGcuuCCCUGGuGGGgaCGGgCGGGc -3' miRNA: 3'- cUGUCCu--GGGGCC-CCCgaGUCgGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 167640 | 0.66 | 0.598894 |
Target: 5'- cGCGGGGCCcggcgcgugCCGGGGGC----CCGGGg -3' miRNA: 3'- cUGUCCUGG---------GGCCCCCGagucGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 113695 | 0.66 | 0.598894 |
Target: 5'- cGGCcuccGGCCCgGGGacGGCggcggCAGCCGGGa -3' miRNA: 3'- -CUGuc--CUGGGgCCC--CCGa----GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 5064 | 0.66 | 0.589286 |
Target: 5'- uGCGGGGCUggCCGuuGGaGGCguccacgCGGCCAGGg -3' miRNA: 3'- cUGUCCUGG--GGC--CC-CCGa------GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 117252 | 0.66 | 0.589286 |
Target: 5'- -cCGGGGCCa-GGGGGgUCGG-CAGGu -3' miRNA: 3'- cuGUCCUGGggCCCCCgAGUCgGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 13107 | 0.66 | 0.589286 |
Target: 5'- gGACcuGGCCCuguuuguggaCGGGGGCUCccgGGCCcacgAGGa -3' miRNA: 3'- -CUGucCUGGG----------GCCCCCGAG---UCGG----UCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 39849 | 0.66 | 0.589286 |
Target: 5'- cAguGGGCCggCGGGGGCUguGugcCCGGGg -3' miRNA: 3'- cUguCCUGGg-GCCCCCGAguC---GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 168808 | 0.66 | 0.579705 |
Target: 5'- cGCGGGggaGCCCCGGGG---CGGcCCGGGg -3' miRNA: 3'- cUGUCC---UGGGGCCCCcgaGUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 87166 | 0.66 | 0.579705 |
Target: 5'- -uCAcGGCCCacaGGGGGUuguuuUUGGCCAGGg -3' miRNA: 3'- cuGUcCUGGGg--CCCCCG-----AGUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 169740 | 0.66 | 0.579705 |
Target: 5'- cGCGGGggaGCCCCGGGG---CGGcCCGGGg -3' miRNA: 3'- cUGUCC---UGGGGCCCCcgaGUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 167876 | 0.66 | 0.579705 |
Target: 5'- cGCGGGggaGCCCCGGGG---CGGcCCGGGg -3' miRNA: 3'- cUGUCC---UGGGGCCCCcgaGUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 28809 | 0.67 | 0.570158 |
Target: 5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3' miRNA: 3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 13419 | 0.67 | 0.570158 |
Target: 5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3' miRNA: 3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 16497 | 0.67 | 0.570158 |
Target: 5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3' miRNA: 3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 22653 | 0.67 | 0.570158 |
Target: 5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3' miRNA: 3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 141746 | 0.67 | 0.570158 |
Target: 5'- gGAC-GGugCaCCGGGaaGGCUCAGCgucucCAGGc -3' miRNA: 3'- -CUGuCCugG-GGCCC--CCGAGUCG-----GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 25731 | 0.67 | 0.570158 |
Target: 5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3' miRNA: 3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 32930 | 0.67 | 0.570158 |
Target: 5'- cGCcGGcCCCCGGGaGGCcCGGCCGc- -3' miRNA: 3'- cUGuCCuGGGGCCC-CCGaGUCGGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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