miRNA display CGI


Results 21 - 40 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 44561 0.74 0.233003
Target:  5'- -cCGGGGCUCCGGGuGGCUgGcggaaauGCCAGGa -3'
miRNA:   3'- cuGUCCUGGGGCCC-CCGAgU-------CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 156721 0.73 0.244449
Target:  5'- -cCAGG-CUCCGGGGGUcCAGCCuGGc -3'
miRNA:   3'- cuGUCCuGGGGCCCCCGaGUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 20190 0.73 0.250062
Target:  5'- --gAGGGcCCCCGGGGGCgcaggaGGCUGGGc -3'
miRNA:   3'- cugUCCU-GGGGCCCCCGag----UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 49521 0.72 0.273581
Target:  5'- cGGCGGGugaUCCGGGGGCUCcuCUGGGg -3'
miRNA:   3'- -CUGUCCug-GGGCCCCCGAGucGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 114221 0.72 0.285991
Target:  5'- aGCAGGgccaGCCCCaGGGGGCcCGGCaccuCAGGg -3'
miRNA:   3'- cUGUCC----UGGGG-CCCCCGaGUCG----GUCC- -5'
28883 5' -63.5 NC_006146.1 + 54601 0.72 0.285991
Target:  5'- gGAgAGGACCgCGGGGGCgccaucCGGCCGc- -3'
miRNA:   3'- -CUgUCCUGGgGCCCCCGa-----GUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 60463 0.72 0.305431
Target:  5'- cGGCAGG-CCgCGGGGaGCggugagaGGCCGGGg -3'
miRNA:   3'- -CUGUCCuGGgGCCCC-CGag-----UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 44354 0.71 0.312133
Target:  5'- uGACcgcGGGCCCCGGGGGCagAGaCaaaaAGGa -3'
miRNA:   3'- -CUGu--CCUGGGGCCCCCGagUC-Gg---UCC- -5'
28883 5' -63.5 NC_006146.1 + 46082 0.71 0.318945
Target:  5'- uGCAGGGCCUCGGGGGCgaagCA-CCGu- -3'
miRNA:   3'- cUGUCCUGGGGCCCCCGa---GUcGGUcc -5'
28883 5' -63.5 NC_006146.1 + 136762 0.71 0.318945
Target:  5'- -cCGGGGCUCCGGGaGGCcCGGCCGc- -3'
miRNA:   3'- cuGUCCUGGGGCCC-CCGaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 55640 0.71 0.325869
Target:  5'- --gAGGGCCCCcGaGGGGUgcagCAGCCGGa -3'
miRNA:   3'- cugUCCUGGGG-C-CCCCGa---GUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 26141 0.71 0.330781
Target:  5'- -cCGGGGCCCggucggaaagagcaCGGGGGCUuaagCGGCCuGGa -3'
miRNA:   3'- cuGUCCUGGG--------------GCCCCCGA----GUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 56237 0.71 0.332903
Target:  5'- aGCGGGuCCgCGGGGGCggaGGCgGGGc -3'
miRNA:   3'- cUGUCCuGGgGCCCCCGag-UCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 14108 0.71 0.332903
Target:  5'- gGGCGGGAUgUCGGGGcuGCUggcggcggccuaCAGCCAGGu -3'
miRNA:   3'- -CUGUCCUGgGGCCCC--CGA------------GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 287 0.71 0.340049
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCcGGc -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 137908 0.71 0.353929
Target:  5'- gGACAGGGCCggggguuCCGGGGGC--AGCCGc- -3'
miRNA:   3'- -CUGUCCUGG-------GGCCCCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 128204 0.7 0.36973
Target:  5'- aGCGGG-CgCUgGGGGGCUCuGCCAGc -3'
miRNA:   3'- cUGUCCuG-GGgCCCCCGAGuCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 103552 0.7 0.36973
Target:  5'- gGACccGGACCCCGaggauGGGCUCgcccgggccugGGCCGGGc -3'
miRNA:   3'- -CUGu-CCUGGGGCc----CCCGAG-----------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 137008 0.7 0.375103
Target:  5'- gGACGGGgguaggccgggcacACCCCGGGGaggaGGCCGGGu -3'
miRNA:   3'- -CUGUCC--------------UGGGGCCCCcgagUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 3082 0.7 0.377422
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.