miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 167199 0.67 0.56065
Target:  5'- -cCGGGGuCCCgGGGGGCggcgcgCGGCCu-- -3'
miRNA:   3'- cuGUCCU-GGGgCCCCCGa-----GUCGGucc -5'
28883 5' -63.5 NC_006146.1 + 162399 0.7 0.385221
Target:  5'- -cCGGGACCCCGGuGGGCcaggaUGGUgGGGa -3'
miRNA:   3'- cuGUCCUGGGGCC-CCCGa----GUCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 162379 0.66 0.627824
Target:  5'- --aGGGugCaggaCGGGGGCUUuGCCcuGGGa -3'
miRNA:   3'- cugUCCugGg---GCCCCCGAGuCGG--UCC- -5'
28883 5' -63.5 NC_006146.1 + 162035 0.69 0.417462
Target:  5'- --uGGGAgCCUGGGGGCggGGgCAGGc -3'
miRNA:   3'- cugUCCUgGGGCCCCCGagUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 157581 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 157312 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 156721 0.73 0.244449
Target:  5'- -cCAGG-CUCCGGGGGUcCAGCCuGGc -3'
miRNA:   3'- cuGUCCuGGGGCCCCCGaGUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 155861 0.68 0.5047
Target:  5'- cGCAGG--CCCGGcGGGCccuGGCCAGGc -3'
miRNA:   3'- cUGUCCugGGGCC-CCCGag-UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 155573 0.67 0.52311
Target:  5'- cGCGGGGCgCCCGccaGGGGCaCA-CCGGGg -3'
miRNA:   3'- cUGUCCUG-GGGC---CCCCGaGUcGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 154503 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 154234 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 153411 0.66 0.627824
Target:  5'- --aGGGAguUCCCGGGGGCg-GGUguGGc -3'
miRNA:   3'- cugUCCU--GGGGCCCCCGagUCGguCC- -5'
28883 5' -63.5 NC_006146.1 + 151425 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 151156 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 149821 0.75 0.176418
Target:  5'- aACAGG-CUCCGGGuGGUgugggCGGCCAGGg -3'
miRNA:   3'- cUGUCCuGGGGCCC-CCGa----GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 148347 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 148078 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 145269 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 145000 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 142191 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.