Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 56237 | 0.71 | 0.332903 |
Target: 5'- aGCGGGuCCgCGGGGGCggaGGCgGGGc -3' miRNA: 3'- cUGUCCuGGgGCCCCCGag-UCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 114221 | 0.72 | 0.285991 |
Target: 5'- aGCAGGgccaGCCCCaGGGGGCcCGGCaccuCAGGg -3' miRNA: 3'- cUGUCC----UGGGG-CCCCCGaGUCG----GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 169272 | 0.75 | 0.184991 |
Target: 5'- -cCGGGGCCUggCGGGGGC-CAGCgCGGGg -3' miRNA: 3'- cuGUCCUGGG--GCCCCCGaGUCG-GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 23910 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 168543 | 0.68 | 0.477629 |
Target: 5'- --gGGGGCCUCGGGGGCggAGggGGGg -3' miRNA: 3'- cugUCCUGGGGCCCCCGagUCggUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 44313 | 0.69 | 0.416636 |
Target: 5'- aGugGGGGCUggggccguggcagCCGGGGGCuUCuGCaCAGGu -3' miRNA: 3'- -CugUCCUGG-------------GGCCCCCG-AGuCG-GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 49521 | 0.72 | 0.273581 |
Target: 5'- cGGCGGGugaUCCGGGGGCUCcuCUGGGg -3' miRNA: 3'- -CUGUCCug-GGGCCCCCGAGucGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 20832 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 33324 | 0.7 | 0.39233 |
Target: 5'- --uGGGGCUCCGGGGuccggguGCUCcggggcAGCCGGGu -3' miRNA: 3'- cugUCCUGGGGCCCC-------CGAG------UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 17754 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 54601 | 0.72 | 0.285991 |
Target: 5'- gGAgAGGACCgCGGGGGCgccaucCGGCCGc- -3' miRNA: 3'- -CUgUCCUGGgGCCCCCGa-----GUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 137908 | 0.71 | 0.353929 |
Target: 5'- gGACAGGGCCggggguuCCGGGGGC--AGCCGc- -3' miRNA: 3'- -CUGUCCUGG-------GGCCCCCGagUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 48580 | 0.74 | 0.217941 |
Target: 5'- -cCGGGGCCUCGGGGGUcagggaGGCCAGa -3' miRNA: 3'- cuGUCCUGGGGCCCCCGag----UCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 170203 | 0.75 | 0.184991 |
Target: 5'- -cCGGGGCCUggCGGGGGC-CAGCgCGGGg -3' miRNA: 3'- cuGUCCUGGG--GCCCCCGaGUCG-GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 53637 | 0.75 | 0.184991 |
Target: 5'- cGGCAGGAUCgC-GGGGCUCAGUCAGc -3' miRNA: 3'- -CUGUCCUGGgGcCCCCGAGUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 26987 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 139133 | 0.68 | 0.486575 |
Target: 5'- gGGCuguGGGCCgaaCGGGGGCUCccgucccCCGGGg -3' miRNA: 3'- -CUGu--CCUGGg--GCCCCCGAGuc-----GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 169475 | 0.68 | 0.477629 |
Target: 5'- --gGGGGCCUCGGGGGCggAGggGGGg -3' miRNA: 3'- cugUCCUGGGGCCCCCGagUCggUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 41597 | 0.68 | 0.468765 |
Target: 5'- aGGCGGagaGGCCCgGGGGGCUgGuccGCUGGGc -3' miRNA: 3'- -CUGUC---CUGGGgCCCCCGAgU---CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 129385 | 0.69 | 0.425776 |
Target: 5'- cGC-GGAUCCCGGGcG-UCAGCCGGGc -3' miRNA: 3'- cUGuCCUGGGGCCCcCgAGUCGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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