Results 1 - 20 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 154503 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 32930 | 0.67 | 0.570158 |
Target: 5'- cGCcGGcCCCCGGGaGGCcCGGCCGc- -3' miRNA: 3'- cUGuCCuGGGGCCC-CCGaGUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 157312 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 154234 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 151156 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 148078 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 145000 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 141922 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 157581 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 13107 | 0.66 | 0.589286 |
Target: 5'- gGACcuGGCCCuguuuguggaCGGGGGCUCccgGGCCcacgAGGa -3' miRNA: 3'- -CUGucCUGGG----------GCCCCCGAG---UCGG----UCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 39849 | 0.66 | 0.589286 |
Target: 5'- cAguGGGCCggCGGGGGCUguGugcCCGGGg -3' miRNA: 3'- cUguCCUGGg-GCCCCCGAguC---GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 124531 | 0.66 | 0.608524 |
Target: 5'- gGACGGGGgCCUGGGGGagcugCuGUCGGa -3' miRNA: 3'- -CUGUCCUgGGGCCCCCga---GuCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 3196 | 0.66 | 0.626859 |
Target: 5'- cGACGcgcgcucGGGCCCCGGGGaagccccccGCUC-GCCccucGGGu -3' miRNA: 3'- -CUGU-------CCUGGGGCCCC---------CGAGuCGG----UCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 2264 | 0.66 | 0.626859 |
Target: 5'- cGACGcgcgcucGGGCCCCGGGGaagccccccGCUC-GCCccucGGGu -3' miRNA: 3'- -CUGU-------CCUGGGGCCCC---------CGAGuCGG----UCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 1332 | 0.66 | 0.626859 |
Target: 5'- cGACGcgcgcucGGGCCCCGGGGaagccccccGCUC-GCCccucGGGu -3' miRNA: 3'- -CUGU-------CCUGGGGCCCC---------CGAGuCGG----UCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 117581 | 0.66 | 0.617204 |
Target: 5'- cGCcGGGCCuCCucGGGCUCggacuccGGCCAGGg -3' miRNA: 3'- cUGuCCUGG-GGccCCCGAG-------UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 3375 | 0.66 | 0.608524 |
Target: 5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3' miRNA: 3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 2443 | 0.66 | 0.608524 |
Target: 5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3' miRNA: 3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 1511 | 0.66 | 0.608524 |
Target: 5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3' miRNA: 3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 580 | 0.66 | 0.608524 |
Target: 5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3' miRNA: 3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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