miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 3' -55.1 NC_006146.1 + 54027 0.66 0.897651
Target:  5'- --gUGGCGCCuccGGagGGCGGCCAUGUCGg -3'
miRNA:   3'- cagAUCGUGG---UCg-UCGUCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 54908 0.7 0.72489
Target:  5'- cGUCUGGCcggccuucagggACCGGCAGUAgGCCucgACGUCu -3'
miRNA:   3'- -CAGAUCG------------UGGUCGUCGU-CGG---UGUAGu -5'
28886 3' -55.1 NC_006146.1 + 56434 0.67 0.861548
Target:  5'- aUCgcGCACCAGCAccuGCugGGCCAgAUCu -3'
miRNA:   3'- cAGauCGUGGUCGU---CG--UCGGUgUAGu -5'
28886 3' -55.1 NC_006146.1 + 56523 0.67 0.890896
Target:  5'- cGUCgccGGcCAUCAGCAGCuGaCGCGUCAc -3'
miRNA:   3'- -CAGa--UC-GUGGUCGUCGuCgGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 58367 0.66 0.897651
Target:  5'- cGUCUA-CACCAGCGccuGCAaauGCCACAggCAc -3'
miRNA:   3'- -CAGAUcGUGGUCGU---CGU---CGGUGUa-GU- -5'
28886 3' -55.1 NC_006146.1 + 64207 0.7 0.734944
Target:  5'- uGUCgcggAGCuCCGGCAGgAGgCACAUCu -3'
miRNA:   3'- -CAGa---UCGuGGUCGUCgUCgGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 69223 0.66 0.89565
Target:  5'- cUCUAGCGCCGcccGUAGCccguuuccccccagGGCCAgGUCc -3'
miRNA:   3'- cAGAUCGUGGU---CGUCG--------------UCGGUgUAGu -5'
28886 3' -55.1 NC_006146.1 + 71599 0.7 0.714752
Target:  5'- gGUCUGGCccugACCAgGCGGgagauuaacccCAGCCACGUCu -3'
miRNA:   3'- -CAGAUCG----UGGU-CGUC-----------GUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 75945 0.77 0.368496
Target:  5'- -cCUGGCugCAcaccccccucuaccGCAGCGGCCACGUCc -3'
miRNA:   3'- caGAUCGugGU--------------CGUCGUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 78082 0.67 0.883904
Target:  5'- -cCUGGUACC-GCAGCccccuuuGCCACAUa- -3'
miRNA:   3'- caGAUCGUGGuCGUCGu------CGGUGUAgu -5'
28886 3' -55.1 NC_006146.1 + 78656 0.71 0.663151
Target:  5'- ----cGCcccCCAGCAGCAGCCACAg-- -3'
miRNA:   3'- cagauCGu--GGUCGUCGUCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 96027 0.66 0.916456
Target:  5'- aUCUGuGcCACCGGCAuGguGCCGgcCGUCAa -3'
miRNA:   3'- cAGAU-C-GUGGUCGU-CguCGGU--GUAGU- -5'
28886 3' -55.1 NC_006146.1 + 98326 0.66 0.927754
Target:  5'- cGUCUGGCACgGgGCcgggcGCGGCC-CGUCc -3'
miRNA:   3'- -CAGAUCGUGgU-CGu----CGUCGGuGUAGu -5'
28886 3' -55.1 NC_006146.1 + 98648 0.7 0.734944
Target:  5'- --aUGGcCAUCAGCAGaCAGCCugGUCc -3'
miRNA:   3'- cagAUC-GUGGUCGUC-GUCGGugUAGu -5'
28886 3' -55.1 NC_006146.1 + 100363 0.68 0.845553
Target:  5'- cUCaAGacgaGCCAGCcgGGCAGCCAUGUCc -3'
miRNA:   3'- cAGaUCg---UGGUCG--UCGUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 102871 0.67 0.883904
Target:  5'- -aCUgAGCGCCAagaAGCAGCCGCAg-- -3'
miRNA:   3'- caGA-UCGUGGUcg-UCGUCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 107045 0.66 0.927213
Target:  5'- -aCUGGCACCacguguggcgaguGGCuAGCAGCCAgGa-- -3'
miRNA:   3'- caGAUCGUGG-------------UCG-UCGUCGGUgUagu -5'
28886 3' -55.1 NC_006146.1 + 109136 0.72 0.62134
Target:  5'- cGUCUugGGCAUCAGCAGCAccuGCCcaAUCAg -3'
miRNA:   3'- -CAGA--UCGUGGUCGUCGU---CGGugUAGU- -5'
28886 3' -55.1 NC_006146.1 + 114465 0.68 0.845553
Target:  5'- aUCUGGC-CCAGCAGguGCUgguGCG-CGa -3'
miRNA:   3'- cAGAUCGuGGUCGUCguCGG---UGUaGU- -5'
28886 3' -55.1 NC_006146.1 + 114969 0.68 0.820062
Target:  5'- ---gGGCACgCAGCAGCccacGGCCgcggACAUCAa -3'
miRNA:   3'- cagaUCGUG-GUCGUCG----UCGG----UGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.