miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 3' -55.1 NC_006146.1 + 13645 0.7 0.753782
Target:  5'- aUCaAGCGCCggacacaGGCAGCGGCCACc--- -3'
miRNA:   3'- cAGaUCGUGG-------UCGUCGUCGGUGuagu -5'
28886 3' -55.1 NC_006146.1 + 14116 0.67 0.883904
Target:  5'- uGUCggGGCuGCUGGCGGCGGCCuACAg-- -3'
miRNA:   3'- -CAGa-UCG-UGGUCGUCGUCGG-UGUagu -5'
28886 3' -55.1 NC_006146.1 + 14386 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 17412 0.66 0.92223
Target:  5'- ---aAGCA-CGGCAGCGGCCAuugugcgcCGUCGa -3'
miRNA:   3'- cagaUCGUgGUCGUCGUCGGU--------GUAGU- -5'
28886 3' -55.1 NC_006146.1 + 17464 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 20542 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 23620 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 26698 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 28576 0.78 0.316073
Target:  5'- gGUgUAGCGCCAGCGaCAGCCGCuUCAc -3'
miRNA:   3'- -CAgAUCGUGGUCGUcGUCGGUGuAGU- -5'
28886 3' -55.1 NC_006146.1 + 28726 1.08 0.003378
Target:  5'- gGUCUAGCACCAGCAGCAGCCACAUCAu -3'
miRNA:   3'- -CAGAUCGUGGUCGUCGUCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 32115 0.67 0.876678
Target:  5'- ---aAGCACgCAG-GGguGCCACGUCAc -3'
miRNA:   3'- cagaUCGUG-GUCgUCguCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 42438 0.67 0.883904
Target:  5'- -gCUGGgugcgcgcCGCCAGCauGGCGGCCGgGUCGu -3'
miRNA:   3'- caGAUC--------GUGGUCG--UCGUCGGUgUAGU- -5'
28886 3' -55.1 NC_006146.1 + 43254 0.69 0.77413
Target:  5'- ---cGGCGCCAGC-GCGGCCugGaCAa -3'
miRNA:   3'- cagaUCGUGGUCGuCGUCGGugUaGU- -5'
28886 3' -55.1 NC_006146.1 + 43283 0.66 0.910434
Target:  5'- -cCUGGagguCCGGCAGguGCCuaGCGUCc -3'
miRNA:   3'- caGAUCgu--GGUCGUCguCGG--UGUAGu -5'
28886 3' -55.1 NC_006146.1 + 46583 0.7 0.754763
Target:  5'- ----uGCGCCAGCAGCgucauGGCCACGa-- -3'
miRNA:   3'- cagauCGUGGUCGUCG-----UCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 46778 0.66 0.897651
Target:  5'- ----cGCGCCAccGCA-CAGCCACGUCu -3'
miRNA:   3'- cagauCGUGGU--CGUcGUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 47002 0.67 0.861548
Target:  5'- cGUC-GG-ACCGGCAGCGGCCcgGUCGg -3'
miRNA:   3'- -CAGaUCgUGGUCGUCGUCGGugUAGU- -5'
28886 3' -55.1 NC_006146.1 + 48509 0.66 0.927754
Target:  5'- gGUCUccAGCACCuccGCguuccuGGCcGCCGCAUCc -3'
miRNA:   3'- -CAGA--UCGUGGu--CG------UCGuCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 48750 0.67 0.869224
Target:  5'- uUCUccuuGCGCcCGGCcuccAGCAGCCGCcgCAg -3'
miRNA:   3'- cAGAu---CGUG-GUCG----UCGUCGGUGuaGU- -5'
28886 3' -55.1 NC_006146.1 + 52658 0.67 0.883904
Target:  5'- cUCUGGCccCCAGUAcgugcGCAGCCGCcUCu -3'
miRNA:   3'- cAGAUCGu-GGUCGU-----CGUCGGUGuAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.