miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 3' -55.1 NC_006146.1 + 151497 0.74 0.508474
Target:  5'- aUCUGGCACCcguGCuuguccuGCAGCCACGUg- -3'
miRNA:   3'- cAGAUCGUGGu--CGu------CGUCGGUGUAgu -5'
28886 3' -55.1 NC_006146.1 + 149649 0.66 0.910434
Target:  5'- gGUCgagcacGCGCCGGCAGCGcGCCuGCAc-- -3'
miRNA:   3'- -CAGau----CGUGGUCGUCGU-CGG-UGUagu -5'
28886 3' -55.1 NC_006146.1 + 17464 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 127690 0.66 0.927754
Target:  5'- -cCUcuCACCAGCAGC-GCCcCAUCc -3'
miRNA:   3'- caGAucGUGGUCGUCGuCGGuGUAGu -5'
28886 3' -55.1 NC_006146.1 + 98648 0.7 0.734944
Target:  5'- --aUGGcCAUCAGCAGaCAGCCugGUCc -3'
miRNA:   3'- cagAUC-GUGGUCGUC-GUCGGugUAGu -5'
28886 3' -55.1 NC_006146.1 + 46583 0.7 0.754763
Target:  5'- ----uGCGCCAGCAGCgucauGGCCACGa-- -3'
miRNA:   3'- cagauCGUGGUCGUCG-----UCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 47002 0.67 0.861548
Target:  5'- cGUC-GG-ACCGGCAGCGGCCcgGUCGg -3'
miRNA:   3'- -CAGaUCgUGGUCGUCGUCGGugUAGU- -5'
28886 3' -55.1 NC_006146.1 + 56434 0.67 0.861548
Target:  5'- aUCgcGCACCAGCAccuGCugGGCCAgAUCu -3'
miRNA:   3'- cAGauCGUGGUCGU---CG--UCGGUgUAGu -5'
28886 3' -55.1 NC_006146.1 + 165508 0.67 0.890208
Target:  5'- ---aGGCACCGuauucucGgAGCAGCCACAUgAg -3'
miRNA:   3'- cagaUCGUGGU-------CgUCGUCGGUGUAgU- -5'
28886 3' -55.1 NC_006146.1 + 146834 0.66 0.906702
Target:  5'- ----cGCGCCAGCguagAGCccgggccuggcucggGGCCGCGUCAc -3'
miRNA:   3'- cagauCGUGGUCG----UCG---------------UCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 158093 0.67 0.890896
Target:  5'- ----cGCACCGGCAGCcGCCguccguACGUCc -3'
miRNA:   3'- cagauCGUGGUCGUCGuCGG------UGUAGu -5'
28886 3' -55.1 NC_006146.1 + 78082 0.67 0.883904
Target:  5'- -cCUGGUACC-GCAGCccccuuuGCCACAUa- -3'
miRNA:   3'- caGAUCGUGGuCGUCGu------CGGUGUAgu -5'
28886 3' -55.1 NC_006146.1 + 78656 0.71 0.663151
Target:  5'- ----cGCcccCCAGCAGCAGCCACAg-- -3'
miRNA:   3'- cagauCGu--GGUCGUCGUCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 69223 0.66 0.89565
Target:  5'- cUCUAGCGCCGcccGUAGCccguuuccccccagGGCCAgGUCc -3'
miRNA:   3'- cAGAUCGUGGU---CGUCG--------------UCGGUgUAGu -5'
28886 3' -55.1 NC_006146.1 + 54908 0.7 0.72489
Target:  5'- cGUCUGGCcggccuucagggACCGGCAGUAgGCCucgACGUCu -3'
miRNA:   3'- -CAGAUCG------------UGGUCGUCGU-CGG---UGUAGu -5'
28886 3' -55.1 NC_006146.1 + 48750 0.67 0.869224
Target:  5'- uUCUccuuGCGCcCGGCcuccAGCAGCCGCcgCAg -3'
miRNA:   3'- cAGAu---CGUG-GUCG----UCGUCGGUGuaGU- -5'
28886 3' -55.1 NC_006146.1 + 54027 0.66 0.897651
Target:  5'- --gUGGCGCCuccGGagGGCGGCCAUGUCGg -3'
miRNA:   3'- cagAUCGUGG---UCg-UCGUCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 14386 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 152464 0.7 0.72489
Target:  5'- aUCU-GCACCGGCuGCuGCgACAUCu -3'
miRNA:   3'- cAGAuCGUGGUCGuCGuCGgUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 43254 0.69 0.77413
Target:  5'- ---cGGCGCCAGC-GCGGCCugGaCAa -3'
miRNA:   3'- cagaUCGUGGUCGuCGUCGGugUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.