miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 3' -55.1 NC_006146.1 + 28726 1.08 0.003378
Target:  5'- gGUCUAGCACCAGCAGCAGCCACAUCAu -3'
miRNA:   3'- -CAGAUCGUGGUCGUCGUCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 28576 0.78 0.316073
Target:  5'- gGUgUAGCGCCAGCGaCAGCCGCuUCAc -3'
miRNA:   3'- -CAgAUCGUGGUCGUcGUCGGUGuAGU- -5'
28886 3' -55.1 NC_006146.1 + 75945 0.77 0.368496
Target:  5'- -cCUGGCugCAcaccccccucuaccGCAGCGGCCACGUCc -3'
miRNA:   3'- caGAUCGugGU--------------CGUCGUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 151497 0.74 0.508474
Target:  5'- aUCUGGCACCcguGCuuguccuGCAGCCACGUg- -3'
miRNA:   3'- cAGAUCGUGGu--CGu------CGUCGGUGUAgu -5'
28886 3' -55.1 NC_006146.1 + 109136 0.72 0.62134
Target:  5'- cGUCUugGGCAUCAGCAGCAccuGCCcaAUCAg -3'
miRNA:   3'- -CAGA--UCGUGGUCGUCGU---CGGugUAGU- -5'
28886 3' -55.1 NC_006146.1 + 78656 0.71 0.663151
Target:  5'- ----cGCcccCCAGCAGCAGCCACAg-- -3'
miRNA:   3'- cagauCGu--GGUCGUCGUCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 71599 0.7 0.714752
Target:  5'- gGUCUGGCccugACCAgGCGGgagauuaacccCAGCCACGUCu -3'
miRNA:   3'- -CAGAUCG----UGGU-CGUC-----------GUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 54908 0.7 0.72489
Target:  5'- cGUCUGGCcggccuucagggACCGGCAGUAgGCCucgACGUCu -3'
miRNA:   3'- -CAGAUCG------------UGGUCGUCGU-CGG---UGUAGu -5'
28886 3' -55.1 NC_006146.1 + 152464 0.7 0.72489
Target:  5'- aUCU-GCACCGGCuGCuGCgACAUCu -3'
miRNA:   3'- cAGAuCGUGGUCGuCGuCGgUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 64207 0.7 0.734944
Target:  5'- uGUCgcggAGCuCCGGCAGgAGgCACAUCu -3'
miRNA:   3'- -CAGa---UCGuGGUCGUCgUCgGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 98648 0.7 0.734944
Target:  5'- --aUGGcCAUCAGCAGaCAGCCugGUCc -3'
miRNA:   3'- cagAUC-GUGGUCGUC-GUCGGugUAGu -5'
28886 3' -55.1 NC_006146.1 + 13645 0.7 0.753782
Target:  5'- aUCaAGCGCCggacacaGGCAGCGGCCACc--- -3'
miRNA:   3'- cAGaUCGUGG-------UCGUCGUCGGUGuagu -5'
28886 3' -55.1 NC_006146.1 + 46583 0.7 0.754763
Target:  5'- ----uGCGCCAGCAGCgucauGGCCACGa-- -3'
miRNA:   3'- cagauCGUGGUCGUCG-----UCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 43254 0.69 0.77413
Target:  5'- ---cGGCGCCAGC-GCGGCCugGaCAa -3'
miRNA:   3'- cagaUCGUGGUCGuCGUCGGugUaGU- -5'
28886 3' -55.1 NC_006146.1 + 126188 0.69 0.783619
Target:  5'- aUCaGGCcgGCCAGCGGgGGCCACGg-- -3'
miRNA:   3'- cAGaUCG--UGGUCGUCgUCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 114969 0.68 0.820062
Target:  5'- ---gGGCACgCAGCAGCccacGGCCgcggACAUCAa -3'
miRNA:   3'- cagaUCGUG-GUCGUCG----UCGG----UGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 100363 0.68 0.845553
Target:  5'- cUCaAGacgaGCCAGCcgGGCAGCCAUGUCc -3'
miRNA:   3'- cAGaUCg---UGGUCG--UCGUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 114465 0.68 0.845553
Target:  5'- aUCUGGC-CCAGCAGguGCUgguGCG-CGa -3'
miRNA:   3'- cAGAUCGuGGUCGUCguCGG---UGUaGU- -5'
28886 3' -55.1 NC_006146.1 + 117163 0.67 0.861548
Target:  5'- cGUCUucGCcCCGGC-GCAGCCGCGg-- -3'
miRNA:   3'- -CAGAu-CGuGGUCGuCGUCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 130512 0.67 0.861548
Target:  5'- gGUCUagGGUGCUGuCAGCAGCCACAa-- -3'
miRNA:   3'- -CAGA--UCGUGGUcGUCGUCGGUGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.