miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 3' -55.1 NC_006146.1 + 17464 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 127690 0.66 0.927754
Target:  5'- -cCUcuCACCAGCAGC-GCCcCAUCc -3'
miRNA:   3'- caGAucGUGGUCGUCGuCGGuGUAGu -5'
28886 3' -55.1 NC_006146.1 + 165508 0.67 0.890208
Target:  5'- ---aGGCACCGuauucucGgAGCAGCCACAUgAg -3'
miRNA:   3'- cagaUCGUGGU-------CgUCGUCGGUGUAgU- -5'
28886 3' -55.1 NC_006146.1 + 20542 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 96027 0.66 0.916456
Target:  5'- aUCUGuGcCACCGGCAuGguGCCGgcCGUCAa -3'
miRNA:   3'- cAGAU-C-GUGGUCGU-CguCGGU--GUAGU- -5'
28886 3' -55.1 NC_006146.1 + 149649 0.66 0.910434
Target:  5'- gGUCgagcacGCGCCGGCAGCGcGCCuGCAc-- -3'
miRNA:   3'- -CAGau----CGUGGUCGUCGU-CGG-UGUagu -5'
28886 3' -55.1 NC_006146.1 + 23620 0.66 0.916456
Target:  5'- uGUCUAGgGCCGGgagaGGCAGCCcCGa-- -3'
miRNA:   3'- -CAGAUCgUGGUCg---UCGUCGGuGUagu -5'
28886 3' -55.1 NC_006146.1 + 114465 0.68 0.845553
Target:  5'- aUCUGGC-CCAGCAGguGCUgguGCG-CGa -3'
miRNA:   3'- cAGAUCGuGGUCGUCguCGG---UGUaGU- -5'
28886 3' -55.1 NC_006146.1 + 71599 0.7 0.714752
Target:  5'- gGUCUGGCccugACCAgGCGGgagauuaacccCAGCCACGUCu -3'
miRNA:   3'- -CAGAUCG----UGGU-CGUC-----------GUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 43283 0.66 0.910434
Target:  5'- -cCUGGagguCCGGCAGguGCCuaGCGUCc -3'
miRNA:   3'- caGAUCgu--GGUCGUCguCGG--UGUAGu -5'
28886 3' -55.1 NC_006146.1 + 75945 0.77 0.368496
Target:  5'- -cCUGGCugCAcaccccccucuaccGCAGCGGCCACGUCc -3'
miRNA:   3'- caGAUCGugGU--------------CGUCGUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 14116 0.67 0.883904
Target:  5'- uGUCggGGCuGCUGGCGGCGGCCuACAg-- -3'
miRNA:   3'- -CAGa-UCG-UGGUCGUCGUCGG-UGUagu -5'
28886 3' -55.1 NC_006146.1 + 28576 0.78 0.316073
Target:  5'- gGUgUAGCGCCAGCGaCAGCCGCuUCAc -3'
miRNA:   3'- -CAgAUCGUGGUCGUcGUCGGUGuAGU- -5'
28886 3' -55.1 NC_006146.1 + 52658 0.67 0.883904
Target:  5'- cUCUGGCccCCAGUAcgugcGCAGCCGCcUCu -3'
miRNA:   3'- cAGAUCGu-GGUCGU-----CGUCGGUGuAGu -5'
28886 3' -55.1 NC_006146.1 + 28726 1.08 0.003378
Target:  5'- gGUCUAGCACCAGCAGCAGCCACAUCAu -3'
miRNA:   3'- -CAGAUCGUGGUCGUCGUCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 100363 0.68 0.845553
Target:  5'- cUCaAGacgaGCCAGCcgGGCAGCCAUGUCc -3'
miRNA:   3'- cAGaUCg---UGGUCG--UCGUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 135945 0.67 0.876678
Target:  5'- ---aAGCACgCAG-GGguGCCACGUCAc -3'
miRNA:   3'- cagaUCGUG-GUCgUCguCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 109136 0.72 0.62134
Target:  5'- cGUCUugGGCAUCAGCAGCAccuGCCcaAUCAg -3'
miRNA:   3'- -CAGA--UCGUGGUCGUCGU---CGGugUAGU- -5'
28886 3' -55.1 NC_006146.1 + 130512 0.67 0.861548
Target:  5'- gGUCUagGGUGCUGuCAGCAGCCACAa-- -3'
miRNA:   3'- -CAGA--UCGUGGUcGUCGUCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 117163 0.67 0.861548
Target:  5'- cGUCUucGCcCCGGC-GCAGCCGCGg-- -3'
miRNA:   3'- -CAGAu-CGuGGUCGuCGUCGGUGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.